Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq499 203 4e-47 seq3646 123 3e-23 >seq499 Length=3129 Score = 203 bits (224), Expect = 4e-47 Identities = 620/947 (65%), Gaps = 25/947 (3%) Strand=Plus/Minus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGTGTC-TTGA 104213 || ||||| |||| || || |||| || | ||||||| || || ||||| ||| Sbjct 1040 TACTTTGGCTTCAAGACACTGGAGA-GATCGTATCTTCTCCGTCTTGATGGAAAGGTTGC 982 Query 104214 TGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTG 104273 || | | || ||| ||||| | ||||| || || | || ||||| || || || |||| Sbjct 981 TG-AGAGGCCGCAGCACATGATTATGCGTGTTGCGGTGGGCATTCACGGCGAGGATATTG 923 Query 104274 ATTCTGTCTTGGAGACATACGACAAGATGTC--CCAAGGTATGTTCATTCACGCAACACC 104331 | | ||||||||| || ||||| |||| || |||| ||||| | || Sbjct 922 AGAAGACAATCGAGACATACAACCTCATGTCTTCCAAA-TAC-TTCACACACGCTTCCCC 865 Query 104332 AACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAA 104391 ||| ||||||||||| ||||||||| | || |||| |||||| | ||| || Sbjct 864 AACACTCTTCAATGCCGGTACACCACAGGCTCAGCTGTCGTCCTGCTTCTTGGTCGACAT 805 Query 104392 CAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAA 104451 ||||||||| || | |||||||||| || || | | ||||| |||||||| Sbjct 804 GAAGGAGGACAGTATTGAGGGTATCTATGACACACTCAAGACCTGTGCCATGATCTCAAA 745 Query 104452 GTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCG 104511 | || || ||||| || || |||||||| | | | |||| | | || Sbjct 744 GACCGCCGGAGGTATCGGATTGAACATCCATCGTATCCGTGCCACTGGTGCATACATCGC 685 Query 104512 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 104571 || || || || | || ||||||| |||| ||||| ||||| || ||| ||| || Sbjct 684 TGGTACCAACGGAAACTCGAATGGTATCGTTCCCATGCTCCGCGTCTTCAACAACACTGC 625 Query 104572 GCGCTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGC 104627 | || || | |||| ||| | | | | || || |||| |||| | |||| Sbjct 624 AAGATACGTTGACCAAGGTGG-CAACAAGCGCCCTGGTGCTTTCGCCATCTACGTCGAGC 566 Query 104628 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG 104687 |||||||||||||| || | |||||||| || ||| | ||||| || | ||||| | Sbjct 565 CATGGCACGCGGATGTCTTTGAGTTCCTAGACTTGAGAAAGAACCACGGCAAGGAGGAAG 506 Query 104688 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 104747 || ||| || | |||| |||||||||||| || ||||||||||||||| | |||| Sbjct 505 TCCGTGCCCGTGACTTGTTCTACGCTCTCTGGATCCCGGATCTCTTCATGAAGCGTGTTG 446 Query 104748 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCG 104807 || ||| || | ||| | ||| | || || || || ||||| | | || | Sbjct 445 AGAAGAACGGTGACTGGACCCTCATGTGCCCCAACGAGTGCCCTGGGTTGGCTGACGTTT 386 Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG------GAAGAAGGTCGGGCGA 104861 || || |||||||| || |||||| | |||||| | | | ||||| || Sbjct 385 ACGGCGATGAGTTTGAGGCGCTTTACGAGAGCTACGAGAGGGATGGAAAGGGTCGCAAGA 326 Query 104862 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921 | | || |||| || | ||| | | |||||| || ||||||| ||||| | Sbjct 325 CCATCAAGG-CCCAGAAGC-----TTTGGTACTCCATTCTCGAGGCTCAAACTGAGACAG 272 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 104981 | | || | |||||| ||||| || || || |||| ||||| || || ||||| | | Sbjct 271 GAAACCCTTTCATGCTGTACAAGGATGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCG 212 Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 105041 || || || ||||| || || ||||| || | || | | | |||||| Sbjct 211 GTACCATTCGCAGCTCCAACCTTTGCACAGAGATTGTCGAGTACTCTGCTCCTGATGAGG 152 Query 105042 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGAT 105088 || ||||||||| | ||||| | || || || | |||||| ||| Sbjct 151 TTGCCGTGTGTAACTTGGCATCCCTTGCCCTGCCAACGTATGTTGAT 105 >seq3646 Length=8928 Score = 123 bits (136), Expect = 3e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 ||||| | |||||| | || |||| || || | ||||| || ||||||||| | | | Sbjct 1432 CTCTTCAATGCCATCGAGACCATTCCTTGCATCAAGAAGAAGGCCGATTGGGCTGTCAGG 1373 Query 94774 TGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832 ||| | | |||| | | | |||| || |||| ||| | || || || ||||| Sbjct 1372 TGGATCCAAGACAAGGATTC-TACCTTCGCCCAGCGTCTCGTTGCCTTCGCTGCCGTTGA 1314 Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892 |||||| ||||||||||| |||||| | |||| ||||| |||||||| || ||||| Sbjct 1313 GGGTATTTTCTTCTCTGGCTCCTTCGCATCCATTTTCTGGCTTAAGAAGCGTGGCCTCAT 1254 Query 94893 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 | | || || |||||| |||||||| || || || |||||||| |||||| Sbjct 1253 GGCTGGCCTTACCTTCTCTAACGAGCTCATTTCCCGCGACGAGGGTCTCCAC 1202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583210639571200