Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq499 228 9e-55 seq3646 118 1e-21 seq498 98.7 1e-15 >seq499 Length=3129 Score = 228 bits (252), Expect = 9e-55 Identities = 482/710 (68%), Gaps = 18/710 (3%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAG--CCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCA 53300 ||||| ||| || | ||| ||||| ||||| || ||||| | ||||| || |||| Sbjct 911 GAGACATACAACCTCATGTCTTCCAAA--TACTTCACACACGCTTCCCCAACACTCTTCA 854 Query 53301 ACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACT 53360 | || ||||| || ||||| ||||| ||||||| |||| | |||||||| ||| Sbjct 853 ATGCCGGTACACCACAGGCTCAGCTGTCGTCCTGCTTCTTGGTCGACATGAAGGAGGACA 794 Query 53361 CGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTG 53420 || || || ||||| || || |||||| |||||| ||||| ||| | || | Sbjct 793 GTATTGAGGGTATCTATGACACACTCAAGACCTGTGCCATGATCTCAAAGACCGCCGGAG 734 Query 53421 GTATCGGTATCCACTGC--TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAA 53478 ||||||| | || | ||| | ||||||| | || || ||| || || || Sbjct 733 GTATCGGATTGAACATCCATCGTA--TCCGTGCCACTGGTGCATACATCGCTGGTACCAA 676 Query 53479 CGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGT 53538 ||| | | |||| ||||| || ||||||||||||||||||||||| || | ||||| Sbjct 675 CGGAAACTCGAATGGTATCGTTCCCATGCTCCGCGTCTTCAACAACACTGCAAGATACGT 616 Query 53539 CAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGC 53598 |||| ||||| |||||| || | |||||||||||| ||||||| |||||||| Sbjct 615 TGACCAAGGTGGCAACAAGCGCCCTGGTGCTTTCGCCATCTACGTCGAGCCATGGCACGC 556 Query 53599 CGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCG 53658 || | | ||||| || || || | ||| || || | || || | || ||| Sbjct 555 GGATGTCTTTGAGTTCCTAGACTTGAGAAAGAACCACGGCAAGGAGGAAGTCCGTGCCCG 496 Query 53659 TGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717 |||| |||| ||| ||||| ||||| ||||| ||||||||| | || |||||| ||| Sbjct 495 TGACTTGTTCTAC-GCTCTCTGGATCCCGGATCTCTTCATGAAGCGTGTTGAGAAGAACG 437 Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGG 53777 || ||| ||| |||||||| ||||||||||| || | | || ||||| || | Sbjct 436 GTGACTGGACCCTCATGTGCCCCAACGAGTGCCCTGGGTTGGCTGACGTTTACGGCGATG 377 Query 53778 AGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAG----AAGAAGGTC 53833 ||||| | | | | || || |||| || |||| | | | |||| || Sbjct 376 AGTTTGAGGCGCTTTACGAGAGCTACG-AG---AGGGATGGAAAGGGTCGCAAGACCATC 321 Query 53834 AAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTAC 53893 ||||| | || | ||| | | || ||| || || ||||| |||| || | | Sbjct 320 AAGGCCCAGAAGCTTTGGTACTCCATTCTCGAGGCTCAAACTGAGACAGGAAACCCTTTC 261 Query 53894 ATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 ||| ||||||||| | |||| |||||||||||||||||| |||| Sbjct 260 ATGCTGTACAAGGATGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGG 211 >seq3646 Length=8928 Score = 118 bits (130), Expect = 1e-21 Identities = 337/511 (66%), Gaps = 18/511 (4%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || || || | |||||||| ||| || ||||||||||| | ||| || |||| | Sbjct 1230 TCGTTAGAGAAGGTAAGGCCAGCCATGAGGCCACGCTTCTTAAGCCAGAAAATGGATGCG 1289 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 ||||| ||| |||||| || || || || || ||||| || || || || ||||| Sbjct 1290 AAGGAGCCAGAGAAGAAAATACCCTCAACGGCAGCGAAGGCAACGAGACGCTGGGCGAAG 1349 Query 74910 GGTGCATCGGAAGTC----ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGG 74965 | | ||| ||| ||||| | |||||| || || || |||| ||| Sbjct 1350 GTAGAATCCTT-GTCTTGGATCCACCTGACAGCCCAATCGGCCTTCTTCTTGATGCAAGG 1408 Query 74966 GACAGTATCGATCGCTTGGAAGAGGCTTG--CCTTCT-CTTCGGGATCCTTGACGAGCTT 75022 | || ||||| || | ||||||| || | || ||| | ||||||| | | Sbjct 1409 AATGGTCTCGATGGCATTGAAGAGGTATGTGCGTTGAGCTT---GCTCCTTGATGTATGT 1465 Query 75023 GTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTA 75082 |||||| | || ||||| ||||| | ||||| |||| | | ||| | |||| Sbjct 1466 GTCAATGAGGAGGGAGTATGTCTCGGCGTGAATGTTCTCGATCATAATTTGGAAACCGTA 1525 Query 75083 GAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCC 75140 ||| | || || |||| || || || || | |||| || | || ||||| Sbjct 1526 GAAGCAGCGGGCTTCTGGGATTTGGACCTCGCTGCTGAAGCGCTCGAG--GAGGTTCTCG 1583 Query 75141 ATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCA 75200 |||| || |||||||| |||||||| ||||| || || ||| |||| ||||||| Sbjct 1584 TTGACAATTCCGTCCGACGCGGCGAAGAAAGCGAGAACGTGGGAGATGAAGTAGCGCTCA 1643 Query 75201 TCGTCAGTGA---GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACC 75257 ||||| ||| | |||| ||| || | |||||| | | |||||||||||| | Sbjct 1644 TCGTCGTTGAGGCGGTTGTTCCAGTCGTGGAGGTCCTTGGAGAGATCAATCTCCTCTGCT 1703 Query 75258 GTCCAGAAACTCCCAATCGCCTTTTTGTACA 75288 ||||||||| | |||||| ||||||| Sbjct 1704 GTCCAGAAAGAGGCCTCCGCCTTCTTGTACA 1734 >seq498 Length=2934 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 |||||| ||||| || | ||| || |||||||||||||| |||||| |||| || | || Sbjct 2307 TGCTGACCGTGGAGCCTTCATTGATCAGTCCCAGTCTCTCAACATCCACATGAAGGACCC 2248 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 || ||| |||| | | || ||||||||| || |||||| || |||||||| || Sbjct 2247 AACAATGGGCAAGATCACATCCATGCACTTTGCTGGCTGGAAGCTTGGCCTCAAGACCGG 2188 Query 55906 TATGTACTATCTGCGGACC 55924 |||||||| || || ||| Sbjct 2187 CATGTACTACCTCCGTACC 2169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547168939424000