Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq977 96.9 2e-15 >seq977 Length=6114 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || |||||||| || || ||||| | || || ||| || Sbjct 4764 ATGCAGATTTTTGTCAAGACTCTTACGGGCAAGACGATTACGCTCGAGGTGGAATCATCC 4823 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || || || || ||||| || ||| |||| ||| | Sbjct 4824 GATACTATCGACAAT--GTTAAGAGCAAGATTCAAGACAAGGAGGGTATTCCTCCGGACC 4881 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | ||||| || || || || ||||| || | |||| |||||| || |||| Sbjct 4882 AGCAGCGCCTGATTTTCGCAGGCAAGCAGTTGGAGGATGGCCGCACCTTGTCGGACTACA 4941 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || ||| |||| ||||||||||| | ||| | ||||| || Sbjct 4942 ACATTCAGAAGGAGTCCACTCTGCATTTGGTTCTCCGTCTTCGTGGTGG 4990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355832560937760