Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4873 149 1e-30 seq977 131 4e-25 seq6796 129 1e-24 seq4907 120 7e-22 seq499 86.0 1e-11 >seq4873 Length=13461 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||||||||| | ||| |||||||| || || |||| ||||| || | | || Sbjct 6164 ACGGAGTCTCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGT 6223 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || |||||||| | || || ||||| || ||||| || Sbjct 6224 GCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATTCC 6283 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||| ||||| || | ||||| || | Sbjct 6284 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCCACCTCAAG 6343 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||||| || || | ||| | |||||| Sbjct 6344 GGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 6385 >seq977 Length=6114 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || |||||||| || || || | ||||| || | ||| || Sbjct 4985 ACGAAGACGGAGAACCAAATGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGACAAGGT 4926 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || | |||||| || ||||| || || || || ||||| || |||||||| Sbjct 4925 GCGGCCATCCTCCAACTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATACC 4866 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||| ||||| ||| ||| ||||| || || || | |||||| || | Sbjct 4865 CTCCTTGTCTTGAATCTTGCTCTTAACATTGTCGATAGTATCGGATGATTCCACCTCGAG 4806 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||| |||||||||||||| | ||| || Sbjct 4805 CGTAATCGTCTTGCCCGTAAGAGTCTT 4779 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||||||||| || || |||| ||||| |||| | || | || || Sbjct 4519 AGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 4460 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| || ||||| ||||| || ||||| || ||||||||| Sbjct 4459 TCAAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCT 4400 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || |||||||| || |||| || || || | ||||| ||| Sbjct 4399 TGAATCTTGCTCTTAACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTC 4340 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 4339 TTGCCAGTCA 4330 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | ||| ||||| || || || || | |||||||||| | ||| Sbjct 4757 ACGAAGACGAAGGACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGAGAGAGT 4698 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| |||||||| || || || || ||||| || ||||| || Sbjct 4697 GCGGCCGTCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCC 4638 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||| || ||||||||||| || | || || || || Sbjct 4637 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCAACCTCCAA 4578 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || || | ||| | ||||| Sbjct 4577 AGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 4536 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || | |||||| || || || | |||||||| | || ||| | ||||| Sbjct 5203 AGAACAAGATGTAAAGTGGACTCCTTCTGAATGTTGTAATCAGACAGAGTACGGCCATCC 5144 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||||||||| || || || || || || || ||||| || || || || ||||| ||| Sbjct 5143 TCTAGCTGCTTGCCCGCAAAAATTAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCT 5084 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || |||||||| || || | || || || ||||| || ||| Sbjct 5083 TGGATCTTAGACTTGACGTTATCGATGGTATCCGACGACTCGACCTCCAACGTAATTGTC 5024 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| || | ||| | |||||| Sbjct 5023 TTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 4992 >seq6796 Length=5214 Score = 129 bits (142), Expect = 1e-24 Identities = 200/281 (71%), Gaps = 5/281 (2%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGA 7498 ||| |||||||||||||| | | ||||| || ||||| |||||| ||||| | Sbjct 325 AACATTATATTTAATATTCGCTTTATTTTCAGG-ATTATTAGGTACAGCTTTTTCAGTCT 383 Query 7499 TTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558 | || || ||||||||| || || ||| |||| ||| || | ||| ||| | | Sbjct 384 TAATTAGATTAGAATTAAGTGGACCTGGTGTTCAA-TATATAGCAG--ATAATCAATTAT 440 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | ||| ||| || || || |||||| | ||||||||||||| | |||||||| | || Sbjct 441 ATAACAGTATAATAACAGCTCATGCCATCCTTATGATTTTCTTCATGGTTATGCCAGCTA 500 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 ||||||| || || || |||| || | || | | |||| | |||||||||||| | Sbjct 501 TGATAGGAGGATTTGGGAATTTCTTATTACCACTTTTAGTTGGGGGTCCTGATATGGCAT 560 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 | || || | || ||||||||||| ||| || |||| ||| Sbjct 561 TCCCTAGATTAAATAATATAAGTTTCTGACTATTACCACCT 601 Score = 95.1 bits (104), Expect = 3e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| |||||||| || |||||||| | |||||| || || |||||||| || || || | Sbjct 1006 TTCTGGATGACCGAAGAATCAGAAAAGATGTTGGTATAGTATAGGATCACCACCACCAGC 947 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773 | ||||| || ||||||||||||||||||||||||||| Sbjct 946 AGCTTCAAAGAATGAAGTATTAAAATTTCTATCAGTTAAAAC 905 >seq4907 Length=24529 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | || | ||||| || |||||||| ||||| ||||| Sbjct 4489 TTCTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATC 4430 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || ||||| || ||||| || ||||||||||||||||| ||| ||| ||| Sbjct 4429 AGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCG 4370 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || || || |||| || || || | ||||| |||||||||||||| || || | ||| Sbjct 4369 ATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGAA 4311 >seq499 Length=3129 Score = 86.0 bits (94), Expect = 1e-11 Identities = 184/274 (67%), Gaps = 1/274 (0%) Strand=Plus/Plus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559 ||||||||| |||| || | || || ||||| | ||||| || | || ||| Sbjct 220 TTCTGGTTGCTCTTGCGGTTGCAAGCATCCTTGTACAGCATGAAAGGGTTTCCTGTCTCA 279 Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619 | |||||| |||||||| | |||||| | || || || | ||| | | ||||| Sbjct 280 GTTTGAGCCTCGAGAATGGAGTACCAAAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTT 339 Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679 || ||||||||||| | ||||| || ||||||| || | ||||| | || | | Sbjct 340 CCATCCCTCTCGTAGCTCTCGTAAAGCGCCTCAAACTCATCGCCGTAAACGTCAGCCAAC 399 Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739 || || || || ||||| | ||| |||| || || | | || || | ||||||| Sbjct 400 CCAGGGCACTCGTTGGGGCACATGAGGGTCCAGTCACCGTTCTTCTCAACACGCTTCATG 459 Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAA-AAGT 193772 ||||| || | |||| | |||||||| |||| Sbjct 460 AAGAGATCCGGGATCCAGAGAGCGTAGAACAAGT 493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192426078374720