Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq499 176 6e-39 seq3646 109 8e-19 >seq499 Length=3129 Score = 176 bits (194), Expect = 6e-39 Identities = 406/612 (66%), Gaps = 0/612 (0%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 ||||| ||||| || |||| ||| |||| |||||||| || || |||||||| | | | Sbjct 370 TCAAACTCATCGCCGTAAACGTCAGCCAACCCAGGGCACTCGTTGGGGCACATGAGGGTC 429 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 |||||||| | | || ||| || ||||| |||||||| || ||||| ||||| || Sbjct 430 CAGTCACCGTTCTTCTCAACACGCTTCATGAAGAGATCCGGGATCCAGAGAGCGTAGAAC 489 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 | || |||| | ||| || || || |||||| | | || || ||||| | Sbjct 490 AAGTCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTTCTCAAGTCTAGGAACTCAAAG 549 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 | ||| | |||||||| || | || || || | | | ||||| || || || || || Sbjct 550 ACATCCGCGTGCCATGGCTCGACGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCCACCT 609 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224 || || | ||||| || ||||| || | || | | ||| |||| ||||| || || Sbjct 610 TGGTCAACGTATCTTGCAGTGTTGTTGAAGACGCGGAGCATGGGAACGATACCATTCGAG 669 Query 78225 GTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCT 78284 |||| || || |||| || || ||| | || || ||| | ||| | || Sbjct 670 TTTCCGTTGGTACCAGCGATGTATGCACCAGTGGCACGGATACGATGGATGTTCAATCCG 729 Query 78285 ATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCT 78344 || ||||| || |||| || || | || || || | ||| || ||||||||||| Sbjct 730 ATACCTCCGGCGGTCTTTGAGATCATGGCACAGGTCTTGAGTGTGTCATAGATACCCTCA 789 Query 78345 ATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 78404 |||||||| ||| |||||| | | || ||| |||| ||| || || || Sbjct 790 ATACTGTCCTCCTTCATGTCGACCAAGAAGCAGGACGACAGCTGAGCCTGTGGTGTACCG 849 Query 78405 GCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTT 78464 ||||| || | ||| || || || || || || |||| ||| | || |||||||| Sbjct 850 GCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAGTATTTGGAAGACATGAGGTTGTATGTC 909 Query 78465 TCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGC 78524 || || | || || ||| ||||| || ||||| |||||||| | ||| ||| Sbjct 910 TCGATTGTCTTCTCAATATCCTCGCCGTGAATGCCCACCGCAACACGCATAATCATGTGC 969 Query 78525 TGAGGTCTTTCA 78536 || || || ||| Sbjct 970 TGCGGCCTCTCA 981 >seq3646 Length=8928 Score = 109 bits (120), Expect = 8e-19 Identities = 339/520 (65%), Gaps = 16/520 (3%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 |||||||| || || || || | ||| || ||||| || || ||||| || || | ||| Sbjct 1230 TCGTTAGAGAAGGTAAGGCCAGCCATGAGGCCACGCTTCTTAAGCCAGAAAATGGATGCG 1289 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || || ||||| ||||| || || || ||||| || || || || | || || | Sbjct 1290 AAGGAGCCAGAGAAGAAAATACCCTCAACGGCAGCGAAGGCAACGAGACGCTGGGCGAAG 1349 Query 48303 CTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 | | || |||| | ||||||| |||||||| ||||||||||| | ||||| Sbjct 1350 GTAGAATCCTTGTCTTGGATCCACCTGACAGCCCAATCGGCCTTCTTCTTGATGCAAGGA 1409 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCA--TTGCTATCTTTAACGTAAGTAT 48417 || || || || ||||| ||||| | | || | |||| || || | ||| || | Sbjct 1410 ATGGTCTCGATGGCATTGAAGAGGTATGTGCGTTGAGCTTGC--TCCTTGATGTATGTGT 1467 Query 48418 CTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAA 48477 | || | || || | |||| |||||| || || || || || || ||||| | Sbjct 1468 CAATGAGGAGGGAGTATGTCTCGGCGTGAATGTTCTCGATCATAATTTGGAAACCGTAGA 1527 Query 48478 AACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTA 48537 | || | ||||||| ||| || ||||| | | || || || | ||||| || | Sbjct 1528 AGCAGCGGGCTTCTGGGATTTGGACCTCGCTGCTGAAGCGCTCGAGGAGGTTCTCGTTGA 1587 Query 48538 CTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATA------TTTTT 48591 | ||||| || || || || || || | || || || || || | | Sbjct 1588 CAATTCCGTCCGACGCGGCGAAGAAAGCGAGAACGTGGGAGATGAAGTAGCGCTCATCGT 1647 Query 48592 CGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTG 48651 ||||| || | | || |||||||| | || || || || | ||| | || || |||| Sbjct 1648 CGTTG--AGGC-GGTTGTTCCAGTCGTGGAGGTCCTTGGAGAGATCAATCTCCTCTGCTG 1704 Query 48652 TCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 |||| || || ||||| || || || ||||| | ||| || Sbjct 1705 TCCAGAAAGAGGCCTCCGCCTTCTTGTACATCTGCCAGAT 1744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694609058483200