Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq499 174 2e-38 >seq499 Length=3129 Score = 174 bits (192), Expect = 2e-38 Identities = 405/608 (67%), Gaps = 6/608 (1%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 ||||| ||||| || |||| ||| |||| ||||| || || || || ||||| | | | Sbjct 370 TCAAACTCATCGCCGTAAACGTCAGCCAACCCAGGGCACTCGTTGGGGCACATGAGGGTC 429 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || ||||| | | || ||| || ||||| |||||||| || ||||| ||||| || Sbjct 430 CAGTCACCGTTCTTCTCAACACGCTTCATGAAGAGATCCGGGATCCAGAGAGCGTAGAAC 489 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 | || |||| | ||| || || || |||||| | | ||||||||||| | Sbjct 490 AAGTCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTTCTCAAGTCTAGGAACTCAAAG 549 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 | ||| | |||||||| || | || || || | | |||| || || || || || || Sbjct 550 ACATCCGCGTGCCATGGCTCGACGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCCACCT 609 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 || || | ||||| |||||||| || | || | | ||| |||| || || || || Sbjct 610 TGGTCAACGTATCTTGCAGTGTTGTTGAAGACGCGGAGCATGGGAACGATACCATTCGAG 669 Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCT 76879 | || || || |||| || || ||| ||||| ||| | || | || Sbjct 670 TTTCCGTTGGTACCAGCGATGTATGCACCAGTGGCACGGATACGATGGATGTTCAATCCG 729 Query 76880 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCT 76939 || ||||| || | || ||||| | |||||| || | |||||||||||| ||||| Sbjct 730 ATACCTCCGGCGGTCTTTGAGATCATGGCACAGGTCTTGAGTGTGTCATAGATACCCTCA 789 Query 76940 ATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 76999 ||||| || ||| |||||| | | || ||| |||| ||| || || || Sbjct 790 ATACTGTCCTCCTTCATGTCGACCAAGAAGCAGGACGACAGCTGAGCCTGTGGTGTACCG 849 Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTT 77059 ||||| || | ||| || || || || ||||| |||| ||| | || |||||||| Sbjct 850 GCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAGTATTTGGAAGACATGAGGTTGTATGTC 909 Query 77060 TCAATAACTG-CTTCT--ATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATA 77116 || || || ||||| |||||| ||||| || || || |||||||| | ||| Sbjct 910 TCGAT---TGTCTTCTCAATATCCTCGCCGTGAATGCCCACCGCAACACGCATAATCATG 966 Query 77117 TGCTGAGG 77124 ||||| || Sbjct 967 TGCTGCGG 974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712873087641600