Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2445 127 4e-24 seq1055 89.7 1e-12 >seq2445 Length=7783 Score = 127 bits (140), Expect = 4e-24 Identities = 142/187 (76%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 230452 GGCATGAACGCTGAACTT-ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGT 230510 ||||||||||| ||||| ||| || |||||||||||||| |||||| | | | | Sbjct 683 GGCATGAACGC-CAACTTGATGAAGCAATACATCGAATTCGTCGCCGACAGGCTGCTGCT 741 Query 230511 TGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCAT 230570 | | || ||| ||||||| | ||||| |||| |||||||||| || |||||| ||| Sbjct 742 TTCCCTCGGTAACGAGAAGTTCTACAAGTCTACCAACCCCTTTGACTTCATGGAGAACAT 801 Query 230571 TTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGG 230630 || || ||| ||||||||||||||||| ||||||||| ||||| || | | |||| Sbjct 802 CTCCCTGGCAGGAAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTACCAAAAGACTGG 861 Query 230631 TGTGATG 230637 ||| ||| Sbjct 862 TGTCATG 868 >seq1055 Length=38570 Score = 89.7 bits (98), Expect = 1e-12 Identities = 196/294 (67%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 319374 GTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTT 319433 |||||||||| | ||||| || ||| |||||||||| || || |||||||| Sbjct 20823 GTAGTAACTCTTGGCCTCGGGCTTCTGCTTGACGAACTCGGCCAAGTTACCCTTGTAGCA 20882 Query 319434 CTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCC 319493 |||||| ||| ||||| ||| ||| ||||| || | |||||||| || Sbjct 20883 GGCCAGCTTCTTTCCAGGCTCGTAGTGGTAGATATCCGTGCAGACTTCATCGAGGAAGCC 20942 Query 319494 GGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAA 319553 ||||||||| || || || | | | | || | || | ||||||| || | Sbjct 20943 GGAGTCGTGAGAAACGATGAGAGAAGTGATCTCGGTGTGGGTCTTCAGGTAATCCTGGAG 21002 Query 319554 CCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGC 319613 |||| | ||||| | || | ||||| || || ||||| | || || | | || Sbjct 21003 CCACTTAACGTTGGCAACGTCCAAGTGGTTAGTAGGTTCGTCCAAGAGGAGAACATCAGC 21062 Query 319614 GTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667 |||| |||||| || | ||||||||||| ||||| ||||| || ||||| || Sbjct 21063 CTTCATGAGCATAGCTCTGGCAAGAGCGAGCTTCATCTTCCATCCACCGGACAG 21116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057776102390420