Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2445 354 8e-93 seq335 127 2e-24 seq1054 120 3e-22 >seq2445 Length=7783 Score = 354 bits (392), Expect = 8e-93 Identities = 567/807 (70%), Gaps = 13/807 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| || ||||| |||||||| | |||||| | ||||| Sbjct 8 ATCTGGCAGATGTACAAGAAGGCGGAAGCGTCTTTCTGGACTGCAGAGGAGATTGACCTC 67 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||| | || | || ||| | |||||| | |||||| Sbjct 68 TCCAAGGACCTTCACGACTGGAACAACCGTCTCAATGACGATGAGCGCTACTTCATCTCC 127 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || |||||||| ||||| || ||||||||||| || ||||||| Sbjct 128 CACGTTCTCGCTTTCTTCGCCGCGTCTGACGGAATTGTCAACGAGAACCTTCTCGAGCGC 187 Query 116813 TTCGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| ||| ||||| || | | ||||| || ||||||||||| || || ||| || Sbjct 188 TTCAG-CAGTGAGGTCCAAATCCCAGAGGCTCGCTGCTTCTACGGTTTCCAAATCATGAT 246 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGA 116931 |||||| | ||| | || | || || |||||||||||| ||| | | | | Sbjct 247 CGAGAACATTCACGCCGAGACATACTCCCTCCTCATCGACACATACAT---CAAGGAGCA 303 Query 116932 GGAGAAGCTCCGTT---TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 || ||| | | | || || ||||||||||| || || ||| |||| ||||||| Sbjct 304 GGCCCAGCGCACATACCTCTTCAATGCCATCGAGACCATCCCTTGCATCAAGAAGAAGGC 363 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 ||| ||||| | | |||||| | || || || |||| | | |||||||||| || Sbjct 364 CGACTGGGCTGTCAGGTGGATCCAAGACAAGGATTCCACCTTTGCCCAGCGCCTGGTTGC 423 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 |||||| ||||| ||||| ||||||| || ||| |||||| | || || |||||||| Sbjct 424 CTTCGCTGCCGTTGAGGGTATCTTCTTCTCCGGCTCGTTCGCCTCTATTTTCTGGCTCAA 483 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| || || |||||| | |||||||||||| |||||||||||||||| | || ||||| Sbjct 484 GAAGCGTGGTCTCATGGCTGGCCTGACTTTCTCCAACGAGCTCATCTCCCGCGATGAGGG 543 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGC 117228 ||| || ||||| ||||| | || ||| || | || || || ||| | Sbjct 544 TCTCCACACTGACTTCGCCTGCCTCCTCTTCTCCCACCTTAGACACCGCCCAAGCAAGCA 603 Query 117229 GCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGC 117288 | ||| ||| || ||||||| || ||||| |||||||| ||| | || || || Sbjct 604 GGCTGTCCAGGATGTCATCACCGAGGCTGTCGCGATCGAGCAAGAGTTCTTGACAGAGGC 663 Query 117289 GCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 || || ||||| ||||| || | || | | |||| |||||||||||| |||| Sbjct 664 ACTCCCATGTGCG-CTGCTCGGCATGAACGCCAACTTGATGAAGCAATACATCGAATTCG 722 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 ||||||||||||||||||| || | || ||| |||||| | ||||||| Sbjct 723 TCGCCGACAGGCTGCTGCTTTCCCTCGGTAACGAGAAGTTCTACAAGTCTACCAACCCCT 782 Query 117408 TGGACTTTATGAACCTCATCTCCTTGG 117434 | ||||| ||| | ||||||| ||| Sbjct 783 TTGACTTCATGGAGAACATCTCCCTGG 809 >seq335 Length=36749 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || |||||||| || |||||| | || || || | || Sbjct 30202 ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 30261 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || || | ||||| ||||| || ||| |||||||| Sbjct 30262 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 30321 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || || | |||||||| ||||||||| Sbjct 30322 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCGGACTACAAC 30381 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| || || Sbjct 30382 ATCCAGAAGGAGTCCACCCTTCA 30404 >seq1054 Length=16682 Score = 120 bits (132), Expect = 3e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| ||||||||| | || ||||| || |||| | | | | | | ||| Sbjct 2148 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGACAATGTTAAGAGC 2089 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || || | ||||| ||||| |||||| ||||||||||||| || |||| ||| || || Sbjct 2088 AAGATCCAAGACAAGGAGGGAATCCCCCCGGACCAGCAACGTCTGATCTTCGCCGGAAAG 2029 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || || || |||| ||||||||| |||||||||||||||||||||| | || || || Sbjct 2028 CAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTTCA 1970 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || || || || | || ||||| | | Sbjct 1488 ATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACAATTACGCTGGAAGTCGAGTCGTCG 1429 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || |||| || || ||||||||||| ||||||| Sbjct 1428 GATACCATCGATAACG-TCAAGTCCAAGATTCAAGATAAGGAGGGCATCCCACCGGACCA 1370 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||||||||| ||||| || |||| || || | || ||||| Sbjct 1369 GCAGCGCCTGATTTTCGCGGGCAAGCAGCTCGAGGACGGCCGTACTTTGTCTGATTACAA 1310 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| | ||||| || Sbjct 1309 CATCCAGAAGGAGTCCACATTACATCTTGT 1280 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| | || ||||| | || Sbjct 1944 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTCGAGTCGTCC 1885 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || |||| || || |||||||| || |||||||| Sbjct 1884 GACACCATCGACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGCATTCCTCCGGACCAG 1825 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || ||| |||| || | ||||| || |||||||||| Sbjct 1824 CAGCGCCTGATTTTCGCAGGAAAGCAGTTGGAGGATGGTCGCACTCTGTCCGACTACAAC 1765 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||||||| | || || || Sbjct 1764 ATTCAGAAGGAGTCGACTCTCCA 1742 Score = 91.5 bits (100), Expect = 2e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || || ||||| || |||| || || | | Sbjct 1260 ATGCAGATTTTTGTCAAGACCTTGACTGGAAAGACCATTACTCTCGAGGTTGAGTCTTCT 1201 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | || || ||||| ||||| ||||||| Sbjct 1200 GACACCATTGACAACG-TCAAGTCGAAGATCCAGGATAAGGAGGGTATCCCACCGGACCA 1142 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || ||||| || || | | | || || | ||||||||| Sbjct 1141 GCAGCGCCTGATCTTTGCCGGGAAGCAGCTCGAGGATGGGAGGACGCTGAGCGACTACAA 1082 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| ||| || || Sbjct 1081 CATCCAGAAGGAGAGCACTCTTCA 1058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515196440191840