Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1054 95.1 2e-14 >seq1054 Length=16682 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || || || || || | ||| | ||| || Sbjct 1716 ATGCAGATTTTCGTCAAGACCCTTACGGGGAAGACGATCACGCTTGAGGTGGAATCATCC 1657 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || |||| ||| ||||||||||| || ||||| || || || || Sbjct 1656 GATACCATTGACAACGTAAAGTCGAAGATTCAAGATAAGGAGGGTATTCCTCCGGACCAG 1597 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || || || | |||||| | || || || ||||| || Sbjct 1596 CAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCTTGTCCGATTACAAC 1537 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || |||||||||| | ||| | || |||||||| Sbjct 1536 ATTCAGAAGGAGTCCACCCTGCATTTGGTGCTGCGTCTGCGTGGTGGTAT 1487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755422627731200