Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1054 114 1e-20 seq335 109 6e-19 >seq1054 Length=16682 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||||||||| ||| |||||| ||||| |||||||| | || || || | Sbjct 1501 ACGCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGGCC 1560 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||||||||| || || || ||||||||||| | || | | |||||| Sbjct 1561 ATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTT 1620 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 | | ||| | || | | ||| | | | || ||| |||||||| || | ||||| Sbjct 1621 AT-CTTGAATCTTCGACTTTACGTTGTCAATGGTATCGGATGATTCCACCTCAAGCGTGA 1679 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || ||||| || ||||| || || || ||||| Sbjct 1680 TCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCAT 1716 Score = 102 bits (112), Expect = 9e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||| |||||| |||||| || || |||||||||| || ||| || |||| || ||||| Sbjct 1285 ATGTAATGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTACGGCCGTCCTCGAGCTG 1344 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||| || ||||| || || ||||||||||| | || | || |||||| | | ||| | | Sbjct 1345 CTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTAT-CTTGAATCT 1403 Query 43100 TTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 43158 | | |||| | | | || || ||| || || || | ||| || || || || | Sbjct 1404 TGGACTTGACGTTATCGATGGTATCCGACGACTCGACTTCCAGCGTAATTGTCTTTCCGG 1463 Query 43159 TTAGCGTCTTTACAAAGATTTGCAT 43183 | || ||||| || ||||||||||| Sbjct 1464 TGAGAGTCTTGACGAAGATTTGCAT 1488 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008 ||||||| || || | | ||| | |||||| || | ||||||||||| || || |||| Sbjct 1026 CCTATTGGCCACCACGAAGACGGAGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGT 1085 Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068 | || ||| |||| | | || || |||||||| || || || || || |||||||||| Sbjct 1086 AGTCGCTCAGCGTCCTCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGT 1145 Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTC 43127 | | || | | |||||| ||| ||| || |||| ||| | | | ||||| Sbjct 1146 CCGGTGGGATACCCTCCTTATCCTGGATCTTCGACTTGA-CGTTGTCAATGGTGTCAGAA 1204 Query 43128 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || |||| || ||||| || || || | ||||| ||||| || ||||| Sbjct 1205 GACTCAACCTCGAGAGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1260 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | || |||||| ||||| ||||| || | |||||| || | Sbjct 1729 ACGAAGCACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACC 1788 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | |||||| || ||||| || || ||||||||||| | || | || |||||| Sbjct 1789 ATCCTCCAACTGCTTTCCTGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTT 1848 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| | || | || | | | | |||||| ||| || || || | |||| Sbjct 1849 ATCC-TGAATCTTCGACTTCACATTGTCGATGGTGTCGGACGACTCGACCTCCAAAGTGA 1907 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || || ||||| || || || ||||| Sbjct 1908 TGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 1944 >seq335 Length=36749 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| ||||| || | ||| |||||| || || ||||| || | || || || | || Sbjct 30414 CAAGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATC 30355 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || |||||||| || ||||| || || ||||||||||| | || | | ||||||||| Sbjct 30354 CTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTC 30295 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || |||| | | | |||||| ||| ||||| || | ||||| || Sbjct 30294 CTGGATCTTGGACTTGACATTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGT 30235 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || ||||| || ||||||||||| Sbjct 30234 CTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 30202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571792339957520