Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1566 113 9e-20 seq2445 95.1 2e-14 >seq1566 Length=8448 Score = 113 bits (124), Expect = 9e-20 Identities = 176/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| ||||| |||||||| ||||| || || ||| || || ||||| |||||| Sbjct 7724 CCGATACCTCCGGCAGTCTTTGAGATCATGGCACATGTCTTGAGTGTGTCATAGATACCC 7665 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTG-GGGTGTGACTGT 94904 ||||| ||||| || | | | | | | |||||| || || || || | |||| ||| Sbjct 7664 TCAATACTATCCTCCTTCATGTCGACCAAGAAGCAGGATGACAGCTGAGCCTGTG-GTGT 7606 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 ||| ||| || ||||| ||||| || || || || || | |||||||| | || Sbjct 7605 ACCAGCATTGAAGAGTGTTGGGGAGGCGTGTGTGAAGTATTTGGAAGACATGAGGTTGTA 7546 Query 94965 TGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 ||| |||||| | | || || ||||||||||| || ||||||||||||||||| Sbjct 7545 TGTCTCAATGGCCTTCTCAATATCCTCGCCGTGAATGCCAACCGCCACACGCATAATCAT 7486 Query 95025 GTCCTGAGG 95033 || ||| || Sbjct 7485 GTGCTGTGG 7477 >seq2445 Length=7783 Score = 95.1 bits (104), Expect = 2e-14 Identities = 331/510 (65%), Gaps = 10/510 (2%) Strand=Plus/Plus Query 101851 CATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCA---ATAACGATTTGGC 101907 |||||||||||||| | |||||| | | ||||| ||| || || | || || Sbjct 349 CATCAAGAAGAAGGCCGACTGGGCTGTCAGGTGGATCCAAGACAAGGATTCCACCTTTGC 408 Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967 | | | |||||||| ||||| ||||| || |||||||| || | ||||| || Sbjct 409 CCAGCGCCTGGTTGCCTTCGCTGCCGTTGAGGGTATCTTCTTCTCCGGCTCGTTCGCCTC 468 Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027 ||||||||| ||||||| | ||| | || |||| || || | |||||| ||| |||| Sbjct 469 TATTTTCTGGCTCAAGAAGCGTGGTCTCATGGCTGGCCTGACTTTCTCCAACGAGCTCAT 528 Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGT 102087 || | || || ||||| || ||||| || ||| | || || | || | Sbjct 529 CTCCCGCGATGAGGGTCTCCACACTGACTTCGCCTGCCTCCTCTTCTCCCA--CCTTAGA 586 Query 102088 TGATACCCCATCAAG-AGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAAC 102146 ||| | |||| || | | | || | |||| || || ||| || || | Sbjct 587 CACCGCCCAAGCAAGCAGGCTG--TCCAGGATGTCATCACCGAGGCTGTCGCGATCGAGC 644 Query 102147 AAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGA 102206 |||| || | |||| | || || | | | || |||||| ||| ||||||| Sbjct 645 AAGAGTTCTTGACAGAGGCACTCCCATGTGCGCTGCTCGGCATGAACGCCAACTTGATGA 704 Query 102207 GCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACT 102266 || ||||| ||||| || || || | || || || | || || ||| || Sbjct 705 AGCAATACATCGAATTCGTCGCCGACAGGCTGCTGCTTTCCCTCGGTAACGAGAAGTTCT 764 Query 102267 ATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCG-AGAATAAGACCAAC 102325 | || |||||||||||| |||||||| || || ||||| | || | ||||||||| Sbjct 765 ACAAGTCTACCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGCAGGA-AAGACCAAC 823 Query 102326 TTTTTTGAAAAGAGAGTCGCCGAGTATCAA 102355 || || || ||| | |||||||| || ||| Sbjct 824 TTCTTCGAGAAGCGTGTCGCCGACTACCAA 853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989539192254970