Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1566 187 3e-42 seq2445 125 9e-24 >seq1566 Length=8448 Score = 187 bits (206), Expect = 3e-42 Identities = 569/869 (65%), Gaps = 14/869 (2%) Strand=Plus/Minus Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 63002 |||| ||||||| ||||||||||| ||||||| | | | | || | | ||||| Sbjct 8327 GCAAGGGATGCCAAGTTACACACGGCAACCTCATCTGGAGCAGAGTACTCGACAATCTCC 8268 Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 ||||| || ||| | ||| || || | || | || || ||||| ||| || Sbjct 8267 GTGCACAGGTTAGAGCTGCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAA 8208 Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122 |||||||| || | ||||| || | || || ||| ||||||| || | ||| | | | Sbjct 8207 GCATCCTTGTACAACATGAAAGGGTTTCCTGTCTCAGTCTGAGACTCGAGAATGGAGTAC 8148 Query 63123 CAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCT-TTCTCTT--TCGTATAGA-- 63176 || | | || | ||||| || || ||| | | | ||||| |||||| Sbjct 8147 CAAA-GCTTCTGGGCCTTGAT---AGTCTTGCGACCCTTCTTCTCCGACTCGTATTTCTC 8092 Query 63177 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGA 63236 ||| | | | |||||||| || || |||| | |||||| ||| ||||| | || Sbjct 8091 GTAGAGAGCC--TCGAACTCATCACCGTAAACGTCCGCCAATCCAGGGCATTCGTTGGGG 8034 Query 63237 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63296 ||||| | | ||| || |||| | || || || ||||| |||||||| || ||||| Sbjct 8033 CACATGAGAGTCCAGTCACCGTTCTTCTCAACACGCTTCATGAAGAGATCCGGGATCCAG 7974 Query 63297 AGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 63355 ||||| || || || || | | | |||||| || || ||||| | | || Sbjct 7973 AGAGCGTAGAACAAG-TCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTCCTCAAGTC 7915 Query 63356 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 | |||| | | | ||||| ||||| || || | ||| ||||| | | ||||| || Sbjct 7914 CAAGAACTCGAAGACATCAGCGTGCCATGGCTCAACGTAGATGGCGAAGGCACCAGGGCG 7855 Query 63416 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63475 ||||| || ||||| || | |||||| || ||||| || | || | | ||| |||| Sbjct 7854 CTTGTTGCCACCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAAC 7795 Query 63476 AATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACT 63535 |||||||| || | || |||||||||| || || | || ||||||| ||| | Sbjct 7794 GATACCGTTCGAGTTTCCGTTGGTACCGGCAATGTATGCACCGGTGGCACGGATACGATG 7735 Query 63536 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63595 || | || || || || || | || ||||| | || ||| || | ||||| Sbjct 7734 GATGTTCAATCCGATACCTCCGGCAGTCTTTGAGATCATGGCACATGTCTTGAGTGTGTC 7675 Query 63596 ATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63655 |||||| || || || ||||| || |||||| | | || ||| |||| || Sbjct 7674 ATAGATACCCTCAATACTATCCTCCTTCATGTCGACCAAGAAGCAGGATGACAGCTGAGC 7615 Query 63656 ACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63715 | | || || ||||| || | || || || ||||| || || |||| ||| | Sbjct 7614 CTGTGGTGTACCAGCATTGAAGAGTGTTGGGGAGGCGTGTGTGAAGTATTTGGAAGACAT 7555 Query 63716 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 63775 || ||||| |||||||| || || |||||| ||||| || || || ||||| Sbjct 7554 GAGGTTGTATGTCTCAATGGCCTTCTCAATATCCTCGCCGTGAATGCCAACCGCCACACG 7495 Query 63776 CATTAACATGTGCTGAGGTCTTTCAACAA 63804 ||| | ||||||||| || |||||| ||| Sbjct 7494 CATAATCATGTGCTGTGGCCTTTCAGCAA 7466 >seq2445 Length=7783 Score = 125 bits (138), Expect = 9e-24 Identities = 363/555 (65%), Gaps = 9/555 (2%) Strand=Plus/Minus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| || || | |||||||| || | ||||| || ||||| || || || |||||| | Sbjct 868 CATGACACCAGTCTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCTGC 809 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTA-AAttttt--ttAAA 33394 || || || || |||||||| ||||| || |||||| ||||| || || | ||| Sbjct 808 CAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGTAGACTTGTAGAACTTCTCGTTA-- 751 Query 33395 TCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACA 33454 || | | | || || || ||||||||||| || ||| ||||||| | Sbjct 750 -CCGAGGGAAAGCAGCAGCCTGTCGGCGACGAATTCGATGTATTGCTTCATCAAGTTGGC 692 Query 33455 ATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATAC 33514 ||||| || | || | ||| || ||| | || | || ||||| || || | || Sbjct 691 GTTCATGCCGAGCAGCGCACATGGGAGTGCCTCTGTCAAGAACTCTTGCTCGATCGCGAC 632 Query 33515 CGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAA 33574 || | || || | | || | | | || || | ||| | || || Sbjct 631 AGCCTCGGTGATGACATCCTGGACAGCCTGCTTGCTTGGGCGGTGTCTAAGGTGGGAGAA 572 Query 33575 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAA 33634 | | || ||||| || ||| |||||||| || | || | ||||| || || Sbjct 571 GAGGAGGCAGGCGAAGTCAGTGTGGAGACCCTCATCGCGGGAGATGAGCTCGTTGGAGAA 512 Query 33635 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGA 33694 || || || | ||| || |||||||| || ||||| || || || ||||| || ||||| Sbjct 511 AGTCAGGCCAGCCATGAGACCACGCTTCTTGAGCCAGAAAATAGAGGCGAACGAGCCGGA 452 Query 33695 AAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCT 33751 |||||||| || || || ||||| ||||||| || | || || | || | | Sbjct 451 GAAGAAGATACCCTCAACGGCAGCGAAGGCAACCAGGCGCTGGGCAAAGGTGGAATCCTT 392 Query 33752 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33811 ||| || |||||| | |||||| ||||||||||| || | ||||| || || || || Sbjct 391 GTCTTGGATCCACCTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATGGTCTCGAT 332 Query 33812 GGCATTAAAGAGATA 33826 |||||| ||||| || Sbjct 331 GGCATTGAAGAGGTA 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629789777807520