Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2445 125 1e-23 >seq2445 Length=7783 Score = 125 bits (138), Expect = 1e-23 Identities = 177/248 (71%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| || ||| |||||||| || | || || |||||||| || || || Sbjct 564 CAGGCGAAGTCAGTGTGGAGACCCTCATCGCGGGAGATGAGCTCGTTGGAGAAAGTCAGG 505 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || | ||| || |||||||| || ||||| || || || || || || || || |||||| Sbjct 504 CCAGCCATGAGACCACGCTTCTTGAGCCAGAAAATAGAGGCGAACGAGCCGGAGAAGAAG 445 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGT 50136 || || || || || || |||||||| || | || || | ||| | |||| || Sbjct 444 ATACCCTCAACGGCAGCGAAGGCAACCAGGCGCTGGGCAAAGGTGGAATCCTTGTCTTGG 385 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||| | |||||| ||||||||||| || | ||||| || || || |||||||| Sbjct 384 ATCCACCTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATGGTCTCGATGGCATTG 325 Query 50197 AAGAGATA 50204 ||||| || Sbjct 324 AAGAGGTA 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718237070475760