Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2445 129 8e-25 >seq2445 Length=7783 Score = 129 bits (142), Expect = 8e-25 Identities = 368/557 (66%), Gaps = 13/557 (2%) Strand=Plus/Minus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 ||| || || | |||||||| || | ||||| || ||||| || || ||||||||| | Sbjct 868 CATGACACCAGTCTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCTGC 809 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTA-ACAT-TATAAAtttttttAAAT 41878 || || || || |||||||| ||||| || |||||| || | || || || | | | Sbjct 808 CAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGTAGACTTGTAGAACTTCTCGTTA-- 751 Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938 || | | | || || || |||| |||||| || ||| ||||||| | Sbjct 750 CCGAGGGAAAGCAGCAGCCTGTCGGCGACGAATTCGATGTATTGCTTCATCAAGTTGGCG 691 Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 41998 ||||| || | || | ||| || ||| | || | || ||||| || || | ||| Sbjct 690 TTCATGCCGAGCAGCGCACATGGGAGTGCCTCTGTCAAGAACTCTTGCTCGATCGCGACA 631 Query 41999 GCGTCTGTTATAATAGATCTT--ACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTA 42055 || || || || | | || | || | | ||| | || || | | | || Sbjct 630 GCCTCGGTGATGACA--TCCTGGACAGCCTGCTTGCTTGGGCGGTGTCTA-AGGTGGGAG 574 Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 || | | || ||||| || ||| ||||||||||| | || | |||||||| Sbjct 573 AAGAGGAGGCAGGCGAAGTCAGTGTGGAGACCCTCATCGCGGGAGATGAGCTCGTTGGAG 514 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || || || | ||| || |||||||| || ||||| || ||||| || || || || Sbjct 513 AAAGTCAGGCCAGCCATGAGACCACGCTTCTTGAGCCAGAAAATAGAGGCGAACGAGCCG 454 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 42232 || |||||||| || || || || || ||||||| || | || || | || | Sbjct 453 GAGAAGAAGATACCCTCAACGGCAGCGAAGGCAACCAGGCGCTGGGCAAAGGTGGAATCC 394 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 |||| || |||||| | |||||| ||||||||||| || | ||||| || || || Sbjct 393 TTGTCTTGGATCCACCTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATGGTCTCG 334 Query 42293 ATGGCATTAAAGAGATA 42309 |||||||| ||||| || Sbjct 333 ATGGCATTGAAGAGGTA 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671109552425840