Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2445 178 2e-39 seq1566 113 7e-20 >seq2445 Length=7783 Score = 178 bits (196), Expect = 2e-39 Identities = 377/559 (67%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| | || || || ||||| | || ||| | || || Sbjct 8 ATCTGGCAGATGTACAAGAAGGCGGAAGCGTCTTTCTGGACTGCAGAGGAGATTGACCTC 67 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||||| |||| ||| | | ||| | | ||| |||||| | || || || Sbjct 68 TCCAAGGACCTTCACGACTGGAACAACCGTCTCAATGACGATGAGCGCTACTTCATCTCC 127 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| || | || ||||| |||| || || ||||| |||||||| || || | || Sbjct 128 CACGTTCTCGCTTTCTTCGCCGCGTCTGACGGAATTGTCAACGAGAACCTTCTCGAGCGC 187 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGAT 125257 ||| ||| | || ||||||| ||| ||||| ||||| |||||||||||||| Sbjct 188 TTCAGCAGTGAGGTCCAAATCCCAGAGGC-TCGCTGCTTCTACGGTTTCCAAATCATGAT 246 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG-- 125315 |||||| | ||| | || | ||||| || || |||| ||||| || | | Sbjct 247 CGAGAACATTCACGCCGAGACATACTCCCTCCTCATCGACACATACATCAAGGAGCAGGC 306 Query 125316 -CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 || || | | || ||||| || || ||||| || | || | || || ||||| Sbjct 307 CCAGCGCACATAC---CTCTTCAATGCCATCGAGACCATCCCTTGCATCAAGAAGAAGGC 363 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | |||| | |||||||| | ||| | | || | | ||| | | ||||| || Sbjct 364 CGACTGGGCTGTCAGGTGGATCCAAGACAAGGATTCCACCTTTGCCCAGCGCCTGGTTGC 423 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 ||||| ||||| ||||| |||||||| || || || || | || || |||||||| Sbjct 424 CTTCGCTGCCGTTGAGGGTATCTTCTTCTCCGGCTCGTTCGCCTCTATTTTCTGGCTCAA 483 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 |||||| || |||||| | || ||||| | |||||| | || || || || ||||| Sbjct 484 GAAGCGTGGTCTCATGGCTGGCCTGACTTTCTCCAACGAGCTCATCTCCCGCGATGAGGG 543 Query 125555 CCTACACTGTGACTTTGCC 125573 || ||| |||||| ||| Sbjct 544 TCTCCACACTGACTTCGCC 562 >seq1566 Length=8448 Score = 113 bits (124), Expect = 7e-20 Identities = 314/475 (66%), Gaps = 10/475 (2%) Strand=Plus/Plus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 |||||||| ||||| ||||| || || || || || | ||| ||||| | || || | Sbjct 7829 GATACGTTGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTCGCCATCTACGTTGAGCCAT 7888 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||||| || || || || || | || || | || ||| ||| || || | | Sbjct 7889 GGCACGCTGATGTCTTCGAGTTCTTGGACTTGAGGAAGAACCACGGCAAGGAGGAAGTCC 7948 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT---CA 97041 | ||| | |||||||| || || |||||| | || ||| | ||||||||||| || | Sbjct 7949 GTGCCCGTGACTTGTTCTACGCTCTCTGGATCCCGGATCTCTTCATGAAGCGTGTTGAGA 8008 Query 97042 ACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCT 97101 | |||||| |||||| || ||||||||| || | || || || | || | Sbjct 8009 AGAACGGTG---ACTGGACTCTCATGTGCCCCAACGAATGCCCTGGATTGGCGGACGTTT 8065 Query 97102 GGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAG-GGCCGATACGTGAGA 97160 || || ||||| ||||| ||| | |||||| ||| | | || ||| Sbjct 8066 ACGGTGATGAGTTCGAGGCTCTCTACGAGAAATACGAGTCGGAGAAGAAGGGTCGCAAGA 8125 Query 97161 CGAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAAC 97219 | | || | || | |||| || ||| | |||| | | ||||| ||||| |||| Sbjct 8126 CTA-TCAAGGC-CCAGAAGCTTTGGTACTCCATTCTCGAGTCTCAGACTGAGACAGGAAA 8183 Query 97220 TCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCAC 97279 || | ||| | ||||||||| | || ||||| |||||||| || | || || Sbjct 8184 CCCTTTCATGTTGTACAAGGATGCTTGCAACCGCAAGAGCAACCAGAAGAACCTTGGTAC 8243 Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 |||| |||| || ||||||||||| ||||| |||||| | |||| || ||| Sbjct 8244 CATCCGCAGCTCTAACCTGTGCACGGAGATTGTCGAGTACTCTGCTCCAGATGAG 8298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741026463709840