Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudogymnoascus_20sp._20VKM_20F-
3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq1054 91.5 1e-13
>seq1054
Length=16682
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || |||| | | ||| ||||| || ||| |||||| |||||||||||||| |
Sbjct 1489 ACCACCACGCAGACGCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAATCGGA 1548
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| || | ||||||||||||||||| | | || | |||||||| ||| ||
Sbjct 1549 CAAGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGG 1608
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| || ||||| || ||| ||| ||| | | |||||||||| || |||
Sbjct 1609 AATACCCTCCTTATCTTGAATCTTCGACTTTACGTTGTCAATGGTATCGGATGATTCCAC 1668
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | || || || || || || || || || || |||||||||||
Sbjct 1669 CTCAAGCGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCAT 1716
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCG-CTCGTCCT 48575
||| || ||||| ||||||||||| || |||||||| || || | ||| | | ||||
Sbjct 1051 CACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTC-GCTCAGCGTCCTCCCATCCT 1109
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
| |||||||| ||| | | || | |||||||| ||| || | || ||||| |||
Sbjct 1110 CGAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATCCT 1169
Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695
|| ||| ||||| | ||||| || | |||||| ||||| || ||||| |
Sbjct 1170 GGATCTTCGACTTGACGTTGTCAATGGTGTCAGAAGACTCAACCTCGAGAGTAATGGTCT 1229
Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| || || | || || ||||||||||||||
Sbjct 1230 TTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1260
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421233056447534
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |