Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2083 116 6e-22 >seq2083 Length=15769 Score = 116 bits (128), Expect = 6e-22 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| |||| | |||| ||||||| || || |||| ||||| Sbjct 8844 TGATCTACGAGGAGACCCGTGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGTGATG 8903 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| ||||||||| | ||| ||||||| | Sbjct 8904 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCCCTCGATGTCGTCTACG 8963 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| ||||||||||| | | || ||||| || ||||| Sbjct 8964 CCCTGAAGCGTCAAGGCCGCACCCTGTACGGTTTCGGTGGTTAA 9007 Score = 95.1 bits (104), Expect = 2e-15 Identities = 79/94 (84%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || |||||||| || ||||||||||| || || Sbjct 8687 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCCAT 8745 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGT 16525 ||| ||||| || |||||||| || ||||||||| Sbjct 8746 CCGCCGTCTCGCACGTCGTGGAGGTGTCAAGCGT 8779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071968839062