Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1566 192 7e-44 seq2445 127 3e-24 >seq1566 Length=8448 Score = 192 bits (212), Expect = 7e-44 Identities = 574/873 (66%), Gaps = 22/873 (3%) Strand=Plus/Minus Query 62888 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62947 || ||||| ||||||| ||||| ||||| ||||||| | | | | || | | || Sbjct 8331 CAGGGCAAGGGATGCCAAGTTACACACGGCAACCTCATCTGGAGCAGAGTACTCGACAAT 8272 Query 62948 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63007 ||| ||||| || ||| | ||| || || | || | || || ||||| ||| Sbjct 8271 CTCCGTGCACAGGTTAGAGCTGCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTT 8212 Query 63008 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63067 || |||||||| || | ||||| || | || || ||| ||||||| || | ||| | Sbjct 8211 GCAAGCATCCTTGTACAACATGAAAGGGTTTCCTGTCTCAGTCTGAGACTCGAGAATGGA 8152 Query 63068 TTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCT-TTCTCTT--TCGTATA 63123 | ||| | | || | ||||| || || ||| | | | ||||| |||||| Sbjct 8151 GTACCAAA-GCTTCTGGGCCTTGAT---AGTCTTGCGACCCTTCTTCTCCGACTCGTATT 8096 Query 63124 GT--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATC 63181 ||| | | | |||||||| || || |||| | |||||||||| ||||| | Sbjct 8095 TCTCGTAGAGAGCC--TCGAACTCATCACCGTAAACGTCCGCCAATCCAGGGCATTCGTT 8038 Query 63182 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 63241 || ||||| | | ||| || |||| | || || || ||||| |||||||| || || Sbjct 8037 GGGGCACATGAGAGTCCAGTCACCGTTCTTCTCAACACGCTTCATGAAGAGATCCGGGAT 7978 Query 63242 CCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAA 63300 ||| ||||| || || || || | || | |||||| || || ||||| | | Sbjct 7977 CCAGAGAGCGTAGAACAAG-TCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTCCTCA 7919 Query 63301 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 63360 || | |||| | | | ||||| ||||| || || | ||| ||||| | | |||| Sbjct 7918 AGTCCAAGAACTCGAAGACATCAGCGTGCCATGGCTCAACGTAGATGGCGAAGGCACCAG 7859 Query 63361 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 63420 | || ||||| || ||||| || | |||||| || ||||| || | || | | ||| | Sbjct 7858 GGCGCTTGTTGCCACCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGG 7799 Query 63421 GAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATAT 63480 ||| |||||||| || | || |||||||||| || || || ||||||| ||| Sbjct 7798 GAACGATACCGTTCGAGTTTCCGTTGGTACCGGCAATGTATGCACCGGTGGCACGGATAC 7739 Query 63481 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63540 | || | || || || || || | || ||||| | || ||| || | | Sbjct 7738 GATGGATGTTCAATCCGATACCTCCGGCAGTCTTTGAGATCATGGCACATGTCTTGAGTG 7679 Query 63541 TGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63600 |||||||||||||||| || ||||| || |||||| | | || ||| |||| Sbjct 7678 TGTCATAGATACCCTCAATACTATCCTCCTTCATGTCGACCAAGAAGCAGGATGACA--- 7622 Query 63601 GGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 63656 | ||| | || || || ||||| || | || || || ||||| || || |||| Sbjct 7621 GCTGA-GCCTGTGGTGTACCAGCATTGAAGAGTGTTGGGGAGGCGTGTGTGAAGTATTTG 7563 Query 63657 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 63716 ||| | || ||||| |||||||| || || |||||| ||||| || || Sbjct 7562 GAAGACATGAGGTTGTATGTCTCAATGGCCTTCTCAATATCCTCGCCGTGAATGCCAACC 7503 Query 63717 GCGACACGCATTAACATGTGCTGAGGTCTTTCA 63749 || |||||||| | ||||||||| || |||||| Sbjct 7502 GCCACACGCATAATCATGTGCTGTGGCCTTTCA 7470 >seq2445 Length=7783 Score = 127 bits (140), Expect = 3e-24 Identities = 363/554 (66%), Gaps = 7/554 (1%) Strand=Plus/Minus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||| || || | |||||||| || | ||||| || ||||| || || || |||||| | Sbjct 868 CATGACACCAGTCTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCTGC 809 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTA-ACAT-TATAAAtttttttAAAT 33117 || || || || |||||||| ||||| || |||||| || | || || || | | | Sbjct 808 CAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGTAGACTTGTAGAACTTCTCGTTA-- 751 Query 33118 CCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33177 || | | | || || || ||||||||||| || ||| ||||||| | Sbjct 750 CCGAGGGAAAGCAGCAGCCTGTCGGCGACGAATTCGATGTATTGCTTCATCAAGTTGGCG 691 Query 33178 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 33237 ||||| || | || | ||| || ||| | || | || ||||| || || | || Sbjct 690 TTCATGCCGAGCAGCGCACATGGGAGTGCCTCTGTCAAGAACTCTTGCTCGATCGCGACA 631 Query 33238 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 33297 || || || || | | || | | | || || | || | || || Sbjct 630 GCCTCGGTGATGACATCCTGGACAGCCTGCTTGCTTGGGCGGTGTCTAAGGTGGGAGAAG 571 Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 | | || ||||| || ||| |||||||| || | || || |||||||| || Sbjct 570 AGGAGGCAGGCGAAGTCAGTGTGGAGACCCTCATCGCGGGAGATGAGCTCGTTGGAGAAA 511 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 || || || | ||| || |||||||| || ||||| || || || ||||| || || || Sbjct 510 GTCAGGCCAGCCATGAGACCACGCTTCTTGAGCCAGAAAATAGAGGCGAACGAGCCGGAG 451 Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTG 33474 |||||||| || || || ||||| ||||||| || | || || | || | || Sbjct 450 AAGAAGATACCCTCAACGGCAGCGAAGGCAACCAGGCGCTGGGCAAAGGTGGAATCCTTG 391 Query 33475 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33534 || || |||||| | |||||| ||||||||||| || | ||||| || || || ||| Sbjct 390 TCTTGGATCCACCTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATGGTCTCGATG 331 Query 33535 GCATTAAAGAGATA 33548 ||||| ||||| || Sbjct 330 GCATTGAAGAGGTA 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622919681307440