Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1054 154 1e-32 seq335 127 2e-24 >seq1054 Length=16682 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || ||| |||| ||||| |||||| | || Sbjct 1716 ATGCAGATTTTCGTCAAGACCCTTACGGGGAAGACGATCACGCTTGAGGTGGAATCATCC 1657 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | || || |||||||| |||||||||||||| || || || Sbjct 1656 GATACCATTGACAACGTAAAGTCGAAGATTCAAGATAAGGAGGGTATTCCTCCGGACCAG 1597 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| || || ||| | |||||| ||||||| | |||||||||||| Sbjct 1596 CAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCTTGTCCGATTACAAC 1537 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || |||||| | ||||| || |||| |||| || ||| Sbjct 1536 ATTCAGAAGGAGTCCACCCTGCATTTGGTGCTGCGTCTGCGTGGTGGT 1489 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || || |||||||| | ||| || | || Sbjct 2148 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGACAATGTTAAGAGC 2089 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||| || || || || || |||||||| || || ||||| || Sbjct 2088 AAGATCCAAGACAAGGAGGGAATCCCCCCGGACCAGCAACGTCTGATCTTCGCCGGAAAG 2029 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | ||||| ||||||| ||||||| |||||||| || || || || ||| | || Sbjct 2028 CAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTTCAC 1969 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || |||| |||| || ||| Sbjct 1968 TTGGTCCTGCGTCTGCGTGGTGGT 1945 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | ||||| || || | || || ||||| || | | Sbjct 1488 ATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACAATTACGCTGGAAGTCGAGTCGTCG 1429 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || |||||||| |||||||| || ||||| || || Sbjct 1428 GATACCATCGATAACGTCAAGTCCAAGATTCAAGATAAGGAGGGCATCCCACCGGACCAG 1369 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| ||| || | || ||||||||| Sbjct 1368 CAGCGCCTGATTTTCGCGGGCAAGCAGCTCGAGGACGGCCGTACTTTGTCTGATTACAAC 1309 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| ||||| | ||| | || | || || ||| Sbjct 1308 ATCCAGAAGGAGTCCACATTACATCTTGTTCTCCGCCTCCGTGGTGGT 1261 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || || ||||| | || || || | || Sbjct 1944 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTCGAGTCGTCC 1885 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || ||||| || |||||||| ||||| || || || Sbjct 1884 GACACCATCGACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGCATTCCTCCGGACCAG 1825 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||||| |||||| ||||| | ||||| |||||| Sbjct 1824 CAGCGCCTGATTTTCGCAGGAAAGCAGTTGGAGGATGGTCGCACTCTGTCCGACTACAAC 1765 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 1764 ATTCAGAAGGAGTCGAC 1748 >seq335 Length=36749 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||| ||||| ||||| | || Sbjct 30202 ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 30261 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || || ||||||||||| ||||| || || || Sbjct 30262 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 30321 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | |||||| ||||||| | || || |||||| Sbjct 30322 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCGGACTACAAC 30381 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | || || || ||| || | || |||||| Sbjct 30382 ATCCAGAAGGAGTCCACCCTTCACTTGGTCTTGAGACTTCGTGGAGGT 30429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419709922052710