Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1154 107 4e-18 seq1055 87.8 4e-12 >seq1154 Length=44727 Score = 107 bits (118), Expect = 4e-18 Identities = 126/168 (75%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||||| || ||||| || ||||||| ||||| | ||||| || |||| Sbjct 40396 CCAACTTCGGTCTCGATGCCGAGCTTGTTTCTCACTCCCGCATGCTGGGTCTCTCCGGAG 40337 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 | ||| ||||| | ||| ||| || |||| |||||| | |||||| |||||||| Sbjct 40336 GTCAGCGTGTCAAGGTCGTCCTCGCCGCCTGCTC-GTGGCAGCGTCCTCACTTGATCGTT 40278 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 || || |||||||||||||| |||||||| || |||||| |||||| Sbjct 40277 CTTGATGAGCCTACCAACTACCTGGACCGTGACTCCCTGGGAGCTCTG 40230 >seq1055 Length=38570 Score = 87.8 bits (96), Expect = 4e-12 Identities = 136/189 (72%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 ||||||| || ||||| || |||||||| || ||||| ||||||||||||||| || Sbjct 20644 TCATTGGTGGTAACGGTGCCGGAAAGTCTACGCTCATCAAGCTCCTGACTGGCGAGA-CC 20586 Query 280234 AGGCCACTGAGGGGTCCGT-TTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTCA 280291 | ||| | || |||| ||| |||||| |||||| |||| || | ||| | || Sbjct 20585 ATCCCAACCACTGG-CCGTGTTGAGAAGCACCCCAACTTGCGTATTGGATACATTAAGCA 20527 Query 280292 GCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTG 280351 |||||| | | ||| | |||| || || || | ||| || ||||| ||| | ||||| Sbjct 20526 GCACGCCCTTGAGCACGTTGAGATGCATCTTGAGAAGACCCCCAACCAGTACCTCCAGTG 20467 Query 280352 GCGCTATGC 280360 ||| || || Sbjct 20466 GCGTTACGC 20458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027790260192094