Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2445 372 6e-98 seq1566 268 2e-66 seq2493 147 4e-30 >seq2445 Length=7783 Score = 372 bits (412), Expect = 6e-98 Identities = 610/857 (71%), Gaps = 24/857 (3%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||||||| | || |||||| || |||||||||||||| Sbjct 8 ATCTGGCAGATGTACAAGAAGGCGGAAGCGTCTTTCTGGACTGCAGAGGAGATTGACCTC 67 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGA-ACGAAAAG---TTTTTCCTCAA 42415 |||||||| || |||| | || |||| | |||| || | ||| || Sbjct 68 TCCAAGGACCTTCACGACTGGAACA-ACCGTCTCAATGACGATGAGCGCTACTTCATCTC 126 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 || | || || ||||||||||| |||||||| || ||||| |||||||| | | Sbjct 127 CCACGTTCTCGCTTTCTTCGCCGCGTCTGACGGAATTGTCAACGAGAACCTTCTCGAGCG 186 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| | ||||| || | ||||| |||||||||||||| ||||| || || Sbjct 187 CTTCAGCAGTGAGGTCCAAATCCCAGAGGCTCGCTGCTTCTACGGTTTCCAAATCATGAT 246 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 |||||| | ||| | ||| ||| || || || |||| |||||| ||| | | Sbjct 247 CGAGAACATTCACGCCGAGACATACTCCCTCCTCATCGACACATACATCAAGGAGCAGGC 306 Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 | |||| | || ||||| ||||| ||||| || || ||||||||||||||||| || Sbjct 307 CCAGCGCACATACCTCTTCAATGCCATCGAGACCATCCCTTGCATCAAGAAGAAGGCCGA 366 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCG-ACGCAACGTTCGGCGAGAGGCTGGTAGCCT 42714 |||||| ||| |||||| | || | | | | || || | | || | ||||| |||| Sbjct 367 CTGGGCTGTCAGGTGGATCCA-AGACAAGGATTCCACCTTTGCCCAGCGCCTGGTTGCCT 425 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 | | ||||| ||||| ||||||||||| ||| | |||||||| || |||||||||||| Sbjct 426 TCGCTGCCGTTGAGGGTATCTTCTTCTCCGGCTCGTTCGCCTCTATTTTCTGGCTCAAGA 485 Query 42775 AG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 || ||| || ||| | || || || ||||| ||||| |||||| | | || ||||| Sbjct 486 AGCGTGGTCTC-ATGGCTGGCCTGACTTTCTCCAACGAGCTCATCTCCCGCGATGAGGGT 544 Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCG-AA 42892 || || | ||||| ||||||||||| ||||| |||||| || ||| |||| | || Sbjct 545 CTCCACACTGACTTCGCCTGCCTCCTCTTCTC---CCACCTTAGACAC-CGCCCAAGCAA 600 Query 42893 GGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCA 42952 | || |||| || ||||||| ||||| || | ||||||| | |||||| | || | Sbjct 601 GCAGGCTGTCCAGGATGTCATCACCGAGGCTGTCGCGATCGAGCAAGAGTTCTTGACAGA 660 Query 42953 GTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATG-TGCAAGTACATCCAG 43010 | | || ||| ||| | ||| ||||||||||| | || | ||| |||| |||||| | Sbjct 661 GGCACT-CCCATGTGCGCTGCTCGGCATGAACGCCAACTTGATGAAGCAA-TACATCGAA 718 Query 43011 TACGTCGCCGACCATCTCCTG--TGCCAGATGGGTCTC-AGCCGCCTCTACAACACGCCG 43067 | |||||||||| || ||| | || | ||| | || | ||||||| | | Sbjct 719 TTCGTCGCCGACAGGCTGCTGCTTTCC--CTCGGTAACGAGAAG-TTCTACAAGTCTACC 775 Query 43068 TGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAG 43127 |||||| ||||| |||||||||||||| ||| || ||||||||||| ||||||||| Sbjct 776 AACCCCTTTGACTTCATGGAGAACATCTCCCTGGCAGGAAAGACCAACTTCTTCGAGAAG 835 Query 43128 CGCGTCGCCGACTACCA 43144 || |||||||||||||| Sbjct 836 CGTGTCGCCGACTACCA 852 >seq1566 Length=8448 Score = 268 bits (296), Expect = 2e-66 Identities = 520/759 (69%), Gaps = 14/759 (2%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| ||| || ||||| ||||| || | | ||||| ||||||||| ||||| ||| Sbjct 8318 GCCAAGTTACACACGGCAACCTCATCTGGAGCAGAGTACTCGACAATCTCCGTGCACAGG 8259 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 ||| || |||||| || |||| || || ||| |||| |||||| || |||||| Sbjct 8258 TTAGAGCTGCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCATCCTTG 8199 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 || | |||||| || || ||||| ||| | |||| | | || ||| || | | Sbjct 8198 TACAACATGAAAGGGTTTCCTGTCTCAGTCTGAGACTCGAGAATGGAGTACCAAAGCTTC 8139 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 ||||||| ||| ||||| |||| ||| | |||||| ||| || |||||| Sbjct 8138 TGGGCCTTGATAGTCTTGCGACCCTTCTTCTCCGACTCGTATTTCTCGTAGAGAGCCTCG 8079 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCC 244985 ||||| || | || || | | || ||||| || | |||||||||||| ||| Sbjct 8078 AACTCATCACCGTAAACGTCCGCCAATCCAGGGCATTCGTTG--GGGCACATGAGAGTCC 8021 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | || ||| | || || | || ||||||||| || ||||||||||| || | ||| | Sbjct 8020 AGTCACCGTTCTTCTCAACACGCTTCATGAAGAGATCCGGGATCCAGAGAGCGTAGAACA 7961 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 ||| | || | || ||| ||| ||||||||||| ||||| || || |||| Sbjct 7960 AGTCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTCCTCAAGTCCAAGAACTCGAAGA 7901 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | || ||||||| ||||| | ||||| |||| ||| || || ||||||||||| |||| Sbjct 7900 CATCAGCGTGCCATGGCTCAACGTAGATGGCGAAGGCACCAGGGCGCTTGTTGCCACCCT 7841 Query 245166 GGTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAG 245224 |||| || || | || | |||||||| ||| || | || || || ||||| ||| Sbjct 7840 GGTCAACGTATCTGGC-AGTGTTGTTGAAGACGCGGAGCATGGGAACGATACCGTTCGAG 7782 Query 245225 TGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGATGGACATGC 245282 | |||||||| || ||||| || || || | | | | | || |||| || | Sbjct 7781 TTTCCGTTGGTACCGGCAATGTATGCACCGGTGGCACGGATACGATG--GATGTTCAATC 7724 Query 245283 CTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCT 245342 | | || ||||| ||| ||||| | ||| || |||||| ||||| || |||| Sbjct 7723 CGATACCTCCGGCAGTCTTTGAGATCATGGCACATGTCTTGAGTGTGTCATAGATACCCT 7664 Query 245343 CCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGC 245402 | || || ||| |||||||| || || |||||||| |||||||| | || | | || Sbjct 7663 CAATACTATCCTCCTTCATGTCGACCAAGAAGCAGGATGACAGCTGAGCCT--GTGGTGT 7606 Query 245403 ACGAG--TTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 || || ||||| || || ||| |||||| || ||||| Sbjct 7605 ACCAGCATTGAAGAGTGTTGGGGAGGCGTGTGTGAAGTA 7567 >seq2493 Length=2855 Score = 147 bits (162), Expect = 4e-30 Identities = 551/856 (64%), Gaps = 31/856 (4%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||||| || || ||||||| |||| | || |||||||||||||||||| Sbjct 836 ACGGTGAACTGGATAGGAGCCGAGGCGGCCATGGTACGGAGATAGTACATGCCGGTCTTG 777 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || || |||| | | |||||||| || | ||| ||| || ||||| Sbjct 776 AGGCCGAGCTTCCAGCCAGCAAAGTGCATGGAGGTGATCTTGCCCAT--TG----TTGGG 723 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 || | | | || ||||||||||||| ||| |||| ||||| | || || Sbjct 722 TCCTTCATGTG------GATGTTGAGGGACTGGGACTGATCGATGAAGGCACCACGATCA 669 Query 243917 GCGGCCATGGTGATGA-GGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTT 243975 |||||||| || || ||| | |||||| ||||| | | |||||||||| | ||| Sbjct 668 GCGGCCATCTGGACGATGGTGCG-CTGAGAGATCTCCCAGACAGTCTTGTAGAGAGCCTT 610 Query 243976 GAGGTGCTCGGGGAACCCTTCG--ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGG 244033 || || | |||| || | ||||| || | || || || |||||| || Sbjct 609 GATGTCGGCTGGGATG--TTGGGAATGTTTTGGATGGATCCTCCGTCCGCGATGATGCGG 552 Query 244034 GTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTC 244093 | |||||| || |||||| |||| | ||| ||| || || || Sbjct 551 TTCTTCATGTTGTCAGACCACAGTCCCATGTCGACCAAGTCCTTGAGCAACCAAGGATTG 492 Query 244094 ACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCG 244153 || ||||| ||||| || | ||| || |||||| ||||| ||| | || |||||| Sbjct 491 ACAACCTGGAACTCGCCAGCCAGGACACGGCGCGAGTAGATGTTCGAGGTGTATGGCTCG 432 Query 244154 ATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGC 244213 | || ||| || ||| || ||||| | ||| ||||| |||||||| | || || Sbjct 431 AAGCACTCGTTGAAGCCGAGAATCTGGGAGGTGGAAGCAGTGGGCATGGGTGCAACGAGA 372 Query 244214 AGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATG 244273 || ||| | || |||||| || ||| ||| |||| || ||||||||||| | Sbjct 371 AGGGAGTTGCGGACACCGTGCTGCTTGATCTGGACCTTGAGAGAGTCCCAGTCCCACAGG 312 Query 244274 CCCG-AGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGAC 244332 | | || || ||| ||||||||| || | || ||| |||||| || Sbjct 311 TCGGTAGGGG----------TGACGCCCCACATATCGTATTGGAGCTCGCCCTTGGACAC 262 Query 244333 GGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC-GT 244391 || |||||||||||| ||| | |||| ||||||||||| | | | | || Sbjct 261 TGGAGATCCCTCGTAGGTCTCGTATGTGCCGTGAATCTGGGCCAGCTCAACGGACGCAGT 202 Query 244392 CGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGC 244451 | | ||| ||| ||| |||||||| |||||| ||| | || |||| | | Sbjct 201 C-AAAGCGCCGTGGTAAATGGTCTCAAAGATCTGGGAGTTGAGGTGCTTAGCCTCGGGGG 143 Query 244452 AGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGA 244511 | |||||| | || | || ||| | || || || ||||| || |||| | | Sbjct 142 AATCGAAGGGCAGGCGGAGGGCCAAGAATGCATCAGCAAGACCCTGGACACCGACAGCAA 83 Query 244512 TGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGA 244571 |||||||| || |||| |||| |||| || |||||||| ||||| | || | Sbjct 82 CTGGTCTGTGACGGAAGTTGCTGCGCCTGGCCTCCTCGACGGGGTAGTAGTTGACATCAA 23 Query 244572 TCACCTTGTTGAGGTT 244587 | | |||||| ||||| Sbjct 22 TGATCTTGTTCAGGTT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944297483815840