Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudogymnoascus_20sp._20VKM_20F-
3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1054 114 3e-20
seq2445 111 4e-19
seq335 105 2e-17
>seq1054
Length=16682
Score = 114 bits (126), Expect = 3e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || ||||||| || ||||| || || || || || |||||||||||
Sbjct 1754 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCCTCCAACTGCTTTCCTGCGAAA 1813
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||| ||||| || || || || || |||||||| || |||| ||||| ||
Sbjct 1814 ATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTATCCTGAATCTTCGACTTCACATTG 1873
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| ||| || || || | ||||| ||||| || ||||| |||||||||
Sbjct 1874 TCGATGGTGTCGGACGACTCGACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTGACG 1933
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 1934 AAAATCTGCAT 1944
Score = 113 bits (124), Expect = 1e-19
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || ||||| | ||| || || ||||| || || || |
Sbjct 1262 CCACCACGGAGGCGGAGAACAAGATGTAATGTGGACTCCTTCTGGATGTTGTAATCAGAC 1321
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || || ||||| || | || || || ||||| ||||| ||||| || ||||
Sbjct 1322 AAAGTACGGCCGTCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGG 1381
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||| || || || | || ||||| || || | ||| ||| || |||
Sbjct 1382 ATGCCCTCCTTATCTTGAATCTTGGACTTGACGTTATCGATGGTATCCGACGACTCGACT 1441
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| || ||||| ||||| |||||||||||||| || |||||
Sbjct 1442 TCCAGCGTAATTGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 1488
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| ||||| || || | || || | |||| ||||| || || ||||| || ||||||
Sbjct 1031 TGGCCACCACGAAGACGGAGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCG 1090
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
||||| | || || || | || || || || |||||||| ||||| || |
Sbjct 1091 CTCAGCGTCCTCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGT 1150
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || ||||||||||| |||| || ||||| || || | || || ||
Sbjct 1151 GGGATACCCTCCTTATCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCAGAAGACTCA 1210
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| || || ||||| || |||| |||||||| || ||||||||
Sbjct 1211 ACCTCGAGAGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1260
Score = 107 bits (118), Expect = 5e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || | ||| | ||| || || || || || || ||||
Sbjct 1490 CCACCACGCAGACGCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 1549
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||||| || || || | || || || || |||||||| ||||| || ||
Sbjct 1550 AAGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGA 1609
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||| || || |||| || ||||| || || | |||| ||||| ||
Sbjct 1610 ATACCCTCCTTATCTTGAATCTTCGACTTTACGTTGTCAATGGTATCGGATGATTCCACC 1669
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||||||||||||||| || || ||||||||||| ||||||||
Sbjct 1670 TCAAGCGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCAT 1716
Score = 96.9 bits (106), Expect = 8e-15
Identities = 125/170 (74%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| ||| ||||| ||||| || | ||| ||||| ||||||
Sbjct 1982 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTTCCGGCGAAG 2041
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401
|||||||| || || |||||||| || || || ||||| || ||| || || ||
Sbjct 2042 ATCAGACGTTGCTGGTCCGGGGGGATTCCCTCCTTGTCTTGGATCTT-GCTCTTAACATT 2100
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCA 288451
|| || | |||| || || || || || ||||| ||||| || ||||
Sbjct 2101 GTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGTCA 2150
>seq2445
Length=7783
Score = 111 bits (122), Expect = 4e-19
Identities = 159/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 269117 AAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGA 269176
|||||||| | || || |||||||| | || |||| ||||| ||| | | ||||
Sbjct 645 AAGAGTTCTTGACAGAGGCACTCCCATGTGCGCTGCTCGGCATGAACGCCAACTTGATGA 704
Query 269177 ATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGT 269236
| ||||| ||||||||||| || || | | | | |||||| | ||||| | |
Sbjct 705 AGCAATACATCGAATTCGTCGCCGACAGGCTGCTGCTTTCCCTCGGTAACGAGAAGTTCT 764
Query 269237 ACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACT 269296
|||| || | || ||||| | ||| ||||| || || || | ||||||||| ||||
Sbjct 765 ACAAGTCTACCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGCAGGAAAGACCAACT 824
Query 269297 TCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340
||||||| ||||||||| |||||| ||| ||||||| |||
Sbjct 825 TCTTCGAGAAGCGTGTCGCCGACTACCAAAAGACTGGTGTCATG 868
>seq335
Length=36749
Score = 105 bits (116), Expect = 2e-17
Identities = 162/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || || ||||| | || | |||| ||| || || ||||| || ||||| |
Sbjct 30428 CCTCCACGAAGTCTCAAGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 30369
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || ||||||||||| ||||| || || |||
Sbjct 30368 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTG---GTCCGGG 30312
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || |||||||| || | || || || || |||| ||| ||| ||
Sbjct 30311 GGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGACGACTCC 30252
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| ||||| || ||||| ||||| ||||| || |||||
Sbjct 30251 ACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 30202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179600985986052
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |