Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2445 93.3 9e-14 seq1055 89.7 1e-12 >seq2445 Length=7783 Score = 93.3 bits (102), Expect = 9e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 243568 GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATC 243627 ||||||||| | | | ||| || |||||||||||||| |||||| | | | | Sbjct 683 GGCATGAACGCCAACTTGATGAAGCAATACATCGAATTCGTCGCCGACAGGCTGCTGCTT 742 Query 243628 GCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATT 243687 | || ||| | ||||| | ||||| || | |||||||||| ||| |||||| ||| Sbjct 743 TCCCTCGGTAACGAGAAGTTCTACAAGTCTACCAACCCCTTTGACTTCATGGAGAACATC 802 Query 243688 TCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGT 243747 || || ||| || || ||||||||||| ||||||||| || || ||| ||||| Sbjct 803 TCCCTGGCAGGAAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTACCAAAAGACTGGT 862 Query 243748 GTGATG 243753 || ||| Sbjct 863 GTCATG 868 >seq1055 Length=38570 Score = 89.7 bits (98), Expect = 1e-12 Identities = 196/294 (67%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 333698 GTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTT 333757 |||||||||| | ||||| || ||| |||||||||| || || |||||||| Sbjct 20823 GTAGTAACTCTTGGCCTCGGGCTTCTGCTTGACGAACTCGGCCAAGTTACCCTTGTAGCA 20882 Query 333758 CTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCC 333817 |||||| ||| ||||| ||| ||| ||||| || | |||||||| || Sbjct 20883 GGCCAGCTTCTTTCCAGGCTCGTAGTGGTAGATATCCGTGCAGACTTCATCGAGGAAGCC 20942 Query 333818 GGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAG 333877 ||||||||| || || || | | | | || | || | ||||||| || || Sbjct 20943 GGAGTCGTGAGAAACGATGAGAGAAGTGATCTCGGTGTGGGTCTTCAGGTAATCCTGGAG 21002 Query 333878 CCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGC 333937 |||| | ||||| | || | ||||| || || ||||| | || || | | || Sbjct 21003 CCACTTAACGTTGGCAACGTCCAAGTGGTTAGTAGGTTCGTCCAAGAGGAGAACATCAGC 21062 Query 333938 GTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991 |||| |||||| || | ||||||||||| ||||| ||||| || || || || Sbjct 21063 CTTCATGAGCATAGCTCTGGCAAGAGCGAGCTTCATCTTCCATCCACCGGACAG 21116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102830062282900