Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudogymnoascus_20sp._20VKM_20F-
3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq1054 114 1e-20
seq335 109 6e-19
>seq1054
Length=16682
Score = 114 bits (126), Expect = 1e-20
Identities = 157/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||| ||||||||||| ||| |||||| ||||| |||||||| | || || || |
Sbjct 1501 ACGCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGGCC 1560
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||||||||| || || || ||||||||||| | || | | ||||||
Sbjct 1561 ATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTT 1620
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
| | ||| | || | | ||| | | | || ||| |||||||| || | |||||
Sbjct 1621 AT-CTTGAATCTTCGACTTTACGTTGTCAATGGTATCGGATGATTCCACCTCAAGCGTGA 1679
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || || ||||| || ||||| || || || |||||
Sbjct 1680 TCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCAT 1716
Score = 105 bits (116), Expect = 7e-18
Identities = 148/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064
||| |||||| |||||| || || |||||||||| || ||| || |||| || |||||
Sbjct 1285 ATGTAATGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTACGGCCGTCCTCGAGCTG 1344
Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124
||| || ||||| || || ||||||||||| | ||| | || |||||| | | ||| | |
Sbjct 1345 CTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTAT-CTTGAATCT 1403
Query 42125 TTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 42183
| | |||| | | | || || ||| || || || | ||| || || || || |
Sbjct 1404 TGGACTTGACGTTATCGATGGTATCCGACGACTCGACTTCCAGCGTAATTGTCTTTCCGG 1463
Query 42184 TTAGCGTCTTTACAAAGATTTGCAT 42208
| || ||||| || |||||||||||
Sbjct 1464 TGAGAGTCTTGACGAAGATTTGCAT 1488
Score = 96.9 bits (106), Expect = 4e-15
Identities = 153/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | |||||| || | ||||||||||| || || ||||| || ||| |||| | |
Sbjct 1045 ACGGAGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTCCC 1104
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||| || || || || || ||||||||||| | ||| | | ||||||
Sbjct 1105 ATCCTCGAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTT 1164
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
||| ||| || |||| ||| | | | ||||| || || || |||| || |
Sbjct 1165 ATCCTGGATCTTCGACTTGA-CGTTGTCAATGGTGTCAGAAGACTCAACCTCGAGAGTAA 1223
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||| || || || | ||||| ||||| || |||||
Sbjct 1224 TGGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1260
Score = 96.9 bits (106), Expect = 4e-15
Identities = 153/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | |||||| || | || |||||| ||||| ||||| || | |||||| || |
Sbjct 1729 ACGAAGCACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACC 1788
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || | |||||| || ||||| || || ||||||||||| | || | || ||||||
Sbjct 1789 ATCCTCCAACTGCTTTCCTGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTT 1848
Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
||| ||| | || | || | | | | |||||| ||| || || || | ||||
Sbjct 1849 ATCC-TGAATCTTCGACTTCACATTGTCGATGGTGTCGGACGACTCGACCTCCAAAGTGA 1907
Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||| ||||| || || ||||| || || || |||||
Sbjct 1908 TGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 1944
>seq335
Length=36749
Score = 109 bits (120), Expect = 6e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055
||| ||||| || | ||| |||||| || || ||||| || | || || || | ||
Sbjct 30414 CAAGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATC 30355
Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115
|| |||||||| || ||||| || || ||||||||||| | || | | |||||||||
Sbjct 30354 CTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTC 30295
Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175
| ||| || |||| | | | |||||| ||| ||||| || | ||||| ||
Sbjct 30294 CTGGATCTTGGACTTGACATTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGT 30235
Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||||||| || ||||| || |||||||||||
Sbjct 30234 CTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 30202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543188803574560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |