Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1054 120 3e-22 seq2445 116 4e-21 seq335 93.3 4e-14 >seq1054 Length=16682 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || ||||| | | | |||||||| ||||||||||| ||| | Sbjct 1490 CCACCACGCAGACGCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 1549 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || ||||| | | |||| || ||||| ||||||||||| Sbjct 1550 AAGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGA 1609 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || || || ||| | || | |||| | || | ||| |||| || ||||| Sbjct 1610 ATACCCTCCTTATC-TTGAATCTTCGACTTTACGTTGTCAATGGTATCGGATGATTCCAC 1668 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | ||| | ||| || || || || || || || ||||||||||| Sbjct 1669 CTCAAGCGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCAT 1716 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || | | |||||||| || || |||| | | Sbjct 1069 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTCCCATCCTCGAGCTGCTTCCCGGCAAA 1128 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || ||||| |||||||| || ||||| || || || ||| || || | | Sbjct 1129 GATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGGATCTTCGACTTGACGTT 1188 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||| | ||||| ||||||| || | || || ||||||| || || || Sbjct 1189 GTCAATGGTGTCAGAAGACTCAACCTCGAGAGTAATGGTCTTTCCAGTCAAGGTCTTGAC 1248 Query 138603 AAAAATCTGCAT 138614 |||||||||||| Sbjct 1249 AAAAATCTGCAT 1260 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| || ||| || ||||| | || || || | Sbjct 1751 GACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCCTCCAACTGCTTTCCTGCG 1810 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 | || || ||||| ||||||||||| || || || || || ||| | || | || Sbjct 1811 AAAATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTATC-CTGAATCTTCGACTTCAC 1869 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||||| |||||| ||||| | || | || || |||||||| || | Sbjct 1870 ATTG-TCGATGGTGTCGGACGACTCGACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCT 1928 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||||||||| Sbjct 1929 TGACGAAAATCTGCAT 1944 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || || || | | | |||||||| || |||||||||||| Sbjct 1946 CCACCACGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 2005 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| ||||| || |||| |||| ||||| || |||||||| || Sbjct 2006 AGGGTGCGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGG 2065 Query 138508 ATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || | || |||| || | ||| |||| ||||| || Sbjct 2066 ATTCCCTCCTTGTCTTGGATCTTGCTCTTAACATTG-TCGATGGTATCGGAGGACTCGAC 2124 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCA 138592 ||| | || | || || ||||||| Sbjct 2125 CTCAAGGGTGATGGTCTTGCCAGTCA 2150 >seq2445 Length=7783 Score = 116 bits (128), Expect = 4e-21 Identities = 491/761 (65%), Gaps = 21/761 (3%) Strand=Plus/Plus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 || || || |||||||| || ||| ||||| | || ||||||||||| | || | Sbjct 101 AATGACGATGAGCGCTACTTCATCTCCCACGTTCTCGCTTTCTTCGCCGCGTCTGACGGA 160 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGAACTC-GAGGCGCA 52204 || || ||| ||||| ||||| | | |||| | | ||| | | | ||||| | Sbjct 161 ATTGTCAACGAGAACCTTCTCGAGCGCTT-CAGCAGTGAGGTCCAAATCCCAGAGGCTCG 219 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 | ||| || ||| ||| | | |||||| | | ||| | |||| ||| || || Sbjct 220 CTGCTTCTACGGTTTCCAAATCATGATCGAGAACATTCACGCCGAGACATACTCCCTCCT 279 Query 52265 CATTGAGCAGCTG-ATAAAAGATGAGCACGAGCGCG-ACACGCTGCTGAATGCGTTCGAG 52322 ||| || || | || || || || | ||||| | || || | ||||| ||||| Sbjct 280 CATCGA-CACATACATCAAGGAGCAGGCCCAGCGCACATAC-CTCTTCAATGCCATCGAG 337 Query 52323 CACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACC 52382 | | || ||| | || ||||| | ||||| | | ||||||| | |||| Sbjct 338 ACCATCCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGGTGGATCCAA---GACAAG 394 Query 52383 G---CCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCC 52439 | |||| | ||| ||||| |||| |||||||| || ||||| | || || ||| Sbjct 395 GATTCCACCTTTGCCCAGCGCCTGGTTGCCTTCGCTGCCGTTGAGGGTATCTTCTTCTCC 454 Query 52440 GGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTC 52499 ||| || ||| | || || | | || | | || | ||| | |||||||| ||| Sbjct 455 GGCTCGTTCGCCTCTATTTTCTGGCTCAAGAAGCGTGGTCTCATGGCTGGCCTGACTTTC 514 Query 52500 AGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTAC 52559 ||||||| | || || ||||| || || || ||||| ||||| || |||||| || | Sbjct 515 TCCAACGAGCTCATCTCCCGCGATGAGGGTCTCCACACTGACTTCGCCTGCCTCCTCTTC 574 Query 52560 AAG-ACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGT--TCAAGGAG 52616 || | |||| || | | | | | ||| || |||| ||| ||| Sbjct 575 TCCCACCTTAGACACCGCCCAA--GCAAGCAGGCTG--TCC--AGGATGTCATCACCGAG 628 Query 52617 GCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATG 52676 || || || ||||| | ||||| || || | || || || | |||||| |||||| Sbjct 629 GCTGTCGCGATCGAGCAAGAGTTCTTGACAGAGGCACTCCCATGTGCGCTGCTCGGCATG 688 Query 52677 AACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC 52736 ||||| | | ||| | |||||||| || || || || | ||| || | ||| Sbjct 689 AACGCCAACTTGATGAAGCAATACATCGAATTCGTCGCCGACAGGCTGCTGCTTTCCCTC 748 Query 52737 GGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTT 52796 || | |||| || ||| || ||| || ||||| || ||| | ||||| || || Sbjct 749 GGTAACGAGAAGTTCTACAAGTCTACCAACCCCTTTGACTTCATGGAGAACATCTCCCTG 808 Query 52797 GAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | || ||||||||||| ||||||||||| |||| ||| || Sbjct 809 GCAGGAAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTA 849 >seq335 Length=36749 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || || || | | | |||||||| || ||||||||||| | || || || Sbjct 30414 CAAGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATC 30355 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 |||||| || || |||| |||| || ||||| |||||||| || || || || ||||| Sbjct 30354 CTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTC 30295 Query 138522 GGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580 ||| || || | ||||| | | ||||||| |||||||||||| | || | | Sbjct 30294 CTGGATCTTGGACTTGACATTGT-CGATAGTGTCGGACGACTCCACCTCAAGGGTGATAG 30236 Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 | || || ||||| || || || || || |||||| || Sbjct 30235 TCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATGACT 30198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496240477608480