Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1054 104 2e-17 >seq1054 Length=16682 Score = 104 bits (114), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195 || || || || ||||| || || || || ||| ||| | | || ||| ||||| | Sbjct 1742 TGGAGAGTCGACTCCTTCTGAATGTTGTAGTCG--GACAGAGTGCGACCATCCTCCAACT 1799 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 | ||||||||| | |||| || ||||||||||| |||||||| || ||||| ||||| | Sbjct 1800 GCTTTCCTGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTATCCTGAATCT 1859 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | || | || | ||||||||| |||||||| || | ||| | || ||||| | Sbjct 1860 TCGACTTCACATTGTCGATGGTGTCGGACGACTCGACCTCCAAAGTGATGGTCTTGCCAG 1919 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || ||||| ||||| Sbjct 1920 TCAGGGTCTTGACGAAAATCTGCAT 1944 Score = 96.9 bits (106), Expect = 3e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | |||| || ||||||||||| || ||||| || ||||||||||| Sbjct 1343 TGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCTTGAATC 1402 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || |||| || | || | ||| || || ||||||||||| || |||| || || || Sbjct 1403 TTGGACTTGA-CGTTATCGATGGTATCCGACGACTCGACTTCCAGCGTAATTGTCTTTCC 1461 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || || || |||||||| Sbjct 1462 GGTGAGAGTCTTGACGAAGATTTGCAT 1488 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || ||| | |||||| || || ||||| || || || |||||| Sbjct 1487 ATACCACCACGCAGACGCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAATCG 1546 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||| || || || || | |||| || ||||||||||| Sbjct 1547 GACAAGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGA 1606 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || ||||||||||| || || | || | || | ||| ||||| || || Sbjct 1607 GGAATACCCTCCTTATCTTGAATCTTCGACTTTA-CGTTGTCAATGGTATCGGATGATTC 1665 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| || || || || || || || ||||| ||||| Sbjct 1666 CACCTCAAGCGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCAT 1716 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 45150 TCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTAT 45209 ||||| ||||| || || ||||| | || | ||| || | || || || || | Sbjct 1070 TCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTCCCATCCTCGAGCTGCTTCCCGGCAAAG 1129 Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| || ||||||||||| || || || || ||||| || || || |||| || | Sbjct 1130 ATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGGATCTTCGACTTGA-CGTT 1188 Query 45270 -TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 || | |||||| |||||||| || |||||||||| || || || || | || || || Sbjct 1189 GTCAATGGTGTCAGAAGACTCAACCTCGAGAGTAATGGTCTTTCCAGTCAAGGTCTTGAC 1248 Query 45329 AAAAATTTGCAT 45340 |||||| ||||| Sbjct 1249 AAAAATCTGCAT 1260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451983232758640