Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1566 176 6e-39 seq2493 156 5e-33 seq2445 149 8e-31 >seq1566 Length=8448 Score = 176 bits (194), Expect = 6e-39 Identities = 609/939 (65%), Gaps = 17/939 (2%) Strand=Plus/Minus Query 116416 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 116475 || ||| | || ||||| | || |||| |||||||| | |||||| | ||| | Sbjct 8342 ACGTACGTTGGCAGGGCAAGGGATGCCAAGTTACACACGGCAACCTCATCTGGAGCAGAG 8283 Query 116476 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 116535 ||||| | ||| ||||| |||| || || || ||||| || | |||||| || || Sbjct 8282 TACTCGACAATCTCCGTGCACAGGTTAGAGCTGCGGATGGTACCAAGGTTCTTCTGGTTG 8223 Query 116536 GACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGAC 116595 ||| ||| || ||||||||||| | ||| | || | || ||||| || || ||| Sbjct 8222 CTCTTGCGGTTGCAAGCATCCTTGTACAACATGAAAGGGTTTCCTGTCTCAGTCTGAGAC 8163 Query 116596 TTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTC 116654 | |||||| | | ||| | | || | | || | | ||| ||| | | || ||| Sbjct 8162 TCGAGAATGGAGTACCAAAGCTTCTGGGCCTTG-ATAGTC---TTGCGACCCTTCTTCTC 8107 Query 116655 C---TCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGG 116711 | ||||| || |||||| ||||| ||||| ||||| | | || | | || || Sbjct 8106 CGACTCGTATTTCTCGTAGAGAGCCTCGAACTCATCACCGTAAACGTCCGCCAATCCAGG 8047 Query 116712 TGCCTTATCTGGA-CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGA 116770 || || ||| || | ||||| ||| | ||| || |||||| ||||||||||||| Sbjct 8046 -GCATTCGTTGGGGCACATGAGAGTCCAGTCACCGTTCTTCTCAACACGCTTCATGAAGA 7988 Query 116771 GGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 116830 | || ||||||||||| || |||| | || || || |||| || | || || | Sbjct 7987 GATCCGGGATCCAGAGAGCGTAGAACAAGTCACGGGCACGGACTTCCTCCTTGCCGTGGT 7928 Query 116831 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 116890 | | ||| ||||| || || | || ||| |||||||| || || | ||| | |||| Sbjct 7927 TCTTCCTCAAGTCCAAGAACTCGAAGACATCAGCGTGCCATGGCTCAACGTAGATGGCGA 7868 Query 116891 TTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGC 116947 | || ||| ||| |||||| || || || || || ||| || |||| Sbjct 7867 AGGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGC 7808 Query 116948 GAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGG 117007 | ||||| |||| |||||| | || | || || || || ||| | | ||| Sbjct 7807 GGAGCATGGGAACGATACCGTTCGAGTTTCCGTTGGTACCGGCAATGTATGCACCGGTGG 7748 Query 117008 CTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACT 117067 | | || | ||||||| || || ||||| || || ||||||||| || || Sbjct 7747 CACGGATACGATGGATGTTCAATCCGATACCTCCGGCAGTCTTTGAGATCATGGCACATG 7688 Query 117068 CCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGC 117127 | |||| || | ||||| || || || || |||| | ||| | ||||||| Sbjct 7687 TCTTGAGTGTGTCATAGATACCCTCAATACTATCCTCCTTCATGTCGACCAAGAAGCAGG 7628 Query 117128 TCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA 117187 |||| || | | |||||||||||| |||||||| ||||| | ||||| |||| Sbjct 7627 ATGACAGCTGAGCCTGTGGTGTACCAGCATTGAAGAGTGTTGGGGAGGCGTGTGTGAA-G 7569 Query 117188 TACCTTGG--GACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAAT 117245 || |||| ||||| | ||| ||||| | | | ||| || || |||||||| Sbjct 7568 TA-TTTGGAAGACATGAGGTTGTATGTCTCAATGGCCTTCTCAATATCCTCGCCGTGAAT 7510 Query 117246 ACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCT 117305 || | | || ||||||| ||||| || || |||| | | | ||||| || | Sbjct 7509 GCCAACCGCCACACGCATAATCATGTGCTGTGGCCTTTCAGCAACGTTGCCATCAAGGCG 7450 Query 117306 CTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344 | ||||| ||| | |||||||| |||||||| Sbjct 7449 GAGAAGGTATGAACGCTCAAGGGTCTTGAAGCCAAAATA 7411 >seq2493 Length=2855 Score = 156 bits (172), Expect = 5e-33 Identities = 472/724 (65%), Gaps = 24/724 (3%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 ||||| |||||||| || |||||||| || |||||||| || | ||||| |||| Sbjct 800 CGGAGATAGTACATGCCGGTCTTGAGGCCGAGCTTCCAGCCAGCAAAGTGCATGGAGGTG 741 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | |||| | |||||| | |||| || ||| | ||||| |||||||||||| Sbjct 740 ATCTTGCCCATTGTTGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGATCGATGAAG 681 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTT---GATTTCCCACACAGTT 115734 || ||||| || ||||| | | | | | | || ||| ||||| ||||| Sbjct 680 GCACCACGATCAGCGGCCATCTGGACGA--TGGTGCG-CTGAGAGATCTCCCAGACAGTC 624 Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794 ||||||| ||| || || ||||||| | || |||||||| || || || || Sbjct 623 TTGTAGAGAGCCTTGATGTCGGCTGGGATGTTGGGAATGTTTTGGATGGATCCTCCGTCC 564 Query 115795 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCT----C 115850 || ||| | | |||||| | | ||||| || || || | | |||| | Sbjct 563 GCGATGATGCGGTTCTTCATGTTGTCAGACCACAGTCCCATGTCGACCAAGTCCTTGAGC 504 Query 115851 CACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTT 115910 || | | ||||||||| ||||| || || ||| || | | |||||||| Sbjct 503 AACCAAGG----ATTGACAACCTGGAACTCGCCAGCCAGGACACGGCGCGAGTAGATGTT 448 Query 115911 GGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGG 115970 | ||||||||||| |||||||| ||| || | || |||| ||||| || ||||| Sbjct 447 CGAGGTGTATGGCTCGAAGCACTCGTTGAAGCCGAGAATCTGGGAGGTGGAAGCAGTGGG 388 Query 115971 CATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGC 116030 ||||||||| | ||||||| |||||||| ||| | | | || | ||||||| | Sbjct 387 CATGGGTGCAACGAGAAGGGAGTTGCGGACACCGTGCTGCTTGATCTGGACCTTGAGAGA 328 Query 116031 GTCCCAGTCGTA---GTTG--AGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATA 116085 ||||||||| | || | || || | | |||||||||| | ||||| Sbjct 327 GTCCCAGTCCCACAGGTCGGTAGGGGTGACGC-----CCCACATATCGTATTGGAGCTCG 273 Query 116086 CCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG 116145 || | |||| |||| |||||||| | ||||| |||| ||| | || || |||| || Sbjct 272 CCCTTGGACACTGGAGATCCCTCGTAGGTCTCGTATGTGCCGTGAATCTGGGCCAGCTCA 213 Query 116146 GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTG 116205 | ||| | || |||| || || |||||||| || | | || | ||| Sbjct 212 ACGGACGCAGTCAAAGCGCCGTGGTAAATGGTCTCAAAGATCTGGGAGTTGAGGTGCTTA 153 Query 116206 GCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACA 116265 |||||| |||||| || | || ||| | ||| |||| || ||||| |||||| Sbjct 152 GCCTCGGGGGAATCGAAGGGCAGGCGGAGGGCCAAGAATGCATCAGCAAGACCCTGGACA 93 Query 116266 CCGA 116269 |||| Sbjct 92 CCGA 89 >seq2445 Length=7783 Score = 149 bits (164), Expect = 8e-31 Identities = 344/510 (67%), Gaps = 9/510 (2%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||||||||| || ||||||||||| || || ||||| ||| || | ||||||||| Sbjct 550 GTGGAGACCCTCATCGCGGGAGATGAGCTCGTTGGAGAAAGTCAGGCCAGCCATGAGACC 491 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | ||||||||| | || ||||| ||||||||||| ||||| || Sbjct 490 ACGCTTCTTGAGCCAGAAAATAGAGGCGAACGAGCCGGAGAAGAAGATACCCTCAACGGC 431 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCATCG 127709 ||||| |||| || |||| |||||||| | | | |||| | | |||| | | | Sbjct 430 AGCGAAGGCAACCAGGCGCTGGGCAAAGGTG-GAATCCTTGTCTTGGATCCACCTGACAG 372 Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT 127769 |||| | ||||| |||| ||| || |||| ||||| ||| || | ||||| | | Sbjct 371 CCCAGTCGGCCTTCTTCTTGATGCAAGGGATGGTCTCGATGGCATTGAAGAGGTATGTGC 312 Query 127770 TTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCA 127829 | | | || |||||||| | || ||||| || ||||| ||| |||| | Sbjct 311 GCTGGGCCTGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTATGTCTCGGCGTGAATGT 252 Query 127830 TTTC-ATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCG 127888 | || || ||| || || ||||||| |||| || || || || |||||| | Sbjct 251 TCTCGATCATGATTTGGAAAC-CGTAGAAGCAGCGAGCCTCTGGGATTTGGACCTCA-CT 194 Query 127889 GCAAAATTGTTATTG-ATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAG 127947 || || | | | | ||||| |||||||| || ||| | || || || || || Sbjct 193 GCTGAAGCGCTCGAGAAGGTTCTCGTTGACAATTCCGTCAGACGCGGCGAAGAAAGCGAG 134 Query 127948 GATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCGAGATC 128004 | | ||||| | | |||| || || | || | |||||||||| || || Sbjct 133 AACGTGGGAGATGAAGTAGCGCTCATCGTCATTGAGACGGTTGTTCCAGTCGTGAAGGTC 74 Query 128005 CTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||| ||||| || | |||||| |||||||| Sbjct 73 CTTGGAGAGGTCAATCTCCTCTGCAGTCCA 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613480098319440