Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2493 123 4e-23 seq1566 120 5e-22 >seq2493 Length=2855 Score = 123 bits (136), Expect = 4e-23 Identities = 342/518 (66%), Gaps = 10/518 (2%) Strand=Plus/Minus Query 203885 AGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGT 203944 |||||||||||||||||||| ||||| || ||| || | ||||||||| | | Sbjct 797 AGATAGTACATGCCGGTCTTGAGGCCGAGCTTCCAGCCAGCAAAGTGCATGGAGGTGATC 738 Query 203945 TTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGC 204004 |||| || | ||||| |||||| ||||| || |||||| || |||||| ||||| Sbjct 737 TTGCCCATTGTTGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGATCGATG-AAGGC 679 Query 204005 GCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAA 204063 || ||||| |||||||| | || ||||| ||| || |||||||| || |||||| | Sbjct 678 ACCACGATCAGCGGCCATCTGGACGATGGTGCGCTGAGAGATCTCCCAGACAGTCTTGTA 619 Query 204064 CACGTCTCTGGTGT--GTTGAGGCACATCTT-CCCACGTCCT-GATCGAGCCGTTGTCGG 204119 | | || ||| | || | || || | || | ||| || || ||| | Sbjct 618 GAGAGCCTTGATGTCGGCTGGG----ATGTTGGGAATGTTTTGGATGGATCCTCCGTCCG 563 Query 204120 CCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCA 204179 | || | | || || | | || ||||| |||| || || ||| | || Sbjct 562 CGATGATGCGGTTCTTCATGTTGTCAGACCACAGTCCCATGTCGACCAAGTCCTTGAGCA 503 Query 204180 GGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGG 204239 || |||| | ||| || || || | ||| || | || | | | | ||| || Sbjct 502 ACCAAGGATTGACAACCTGGAACTCGCCAGCCAGGACACGGCGCGAGTAGATGTTCGAGG 443 Query 204240 TGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGG 204299 || |||| ||||| ||||||| ||||| |||||| | |||| || |||||||||| Sbjct 442 TGTATGGCTCGAAGCACTCGTTGAAGCCGAGAATCTGGGAGGTGGAAGCAGTGGGCATGG 383 Query 204300 GAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCC 204359 | || | ||| ||||||||||| ||||||| | | || | | ||| |||||| || Sbjct 382 GTGCAACGAGAAGGGAGTTGCGGACACCGTGCTGCTTGATCTGGACCTTGAGAGAGTCCC 323 Query 204360 AGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCG 204397 |||| || | | || | ||||||||||| ||| Sbjct 322 AGTCCCACAGGTCGGTAGGGGTGACGCCCCACATATCG 285 >seq1566 Length=8448 Score = 120 bits (132), Expect = 5e-22 Identities = 318/473 (67%), Gaps = 22/473 (5%) Strand=Plus/Minus Query 204931 CTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTC 204990 || |||||| ||||||||| || | |||||||||| |||||| || |||| |||| Sbjct 8232 CTTCTGGTTGCTCTTGCGGTTGCAAGCATCCTTGTACAACATGAAAGGGTTTCCTGTCTC 8173 Query 204991 CATCTGAGA-TCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCA----CTTGCTTCACG 205045 ||||||| ||| |||||| | ||| | | | |||| | ||||| | | Sbjct 8172 AGTCTGAGACTCG-AGAATGGAGTACCAAAGCTTCTGGGCCTTGATAGTCTTGCGACCCT 8114 Query 205046 TACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCC 205105 | | || | ||||||||||| ||| || ||| | || ||| |||||| |||||| Sbjct 8113 T-CTTCTCC---GACTCGTATTTCTCGTAGAGAGCCTCGAACTCATCACCGTAAACGTCC 8058 Query 205106 ATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCA--CATCTGATCGTCTTTCACCC 205163 || || || |||| ||||| ||||| |||| ||| || | | || || | || | Sbjct 8057 GCCAATCCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCA-CCGTTCTTC-TCAACAC 8000 Query 205164 TCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGT 205223 || ||| || || || |||||| || |||| |||| |||||||| | | | | | Sbjct 7999 GCTTCATGAAGAGATCCGGGATCCAGAGAGCGTAGAACAAGTCACGGGCACGGACTTCCT 7940 Query 205224 CGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCT 205282 | | || ||||||| ||||||||| || || | | || |||||||| ||||| Sbjct 7939 CCTTGCCGTGGTTCTTCCTCAAGTCCA-AGAACTCGAAGACATCAGCGTGCCATGGCTCA 7881 Query 205283 AACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCAC---CATGCGAGTC 205339 | | | ||| | || || || | |||||| ||||||||||| || || ||| Sbjct 7880 ACGTAGATGGCGAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTATCTGGCAGTG 7821 Query 205340 ATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392 | |||||| || || ||||| || || | |||||| | | | ||||| || Sbjct 7820 TT---GTTGAAGACGCGGAGCATGGGAACGATACCGTTCGAGTTTCCGTTGGT 7771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795120074019040