Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq335 149 7e-31 seq1054 122 1e-22 >seq335 Length=36749 Score = 149 bits (164), Expect = 7e-31 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| | || |||||||||||||||||||| Sbjct 30393 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 30334 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | | |||||||||| |||||| ||||| | Sbjct 30333 GATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATT 30274 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| ||| ||||| || | ||||| || ||||||||||| || || || Sbjct 30273 GTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCAC 30214 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 30213 GAAGATTTGCAT 30202 >seq1054 Length=16682 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| |||||||| | || || | |||||| || ||||| Sbjct 1753 CTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCCTCCAACTGCTTTCCTGCGAA 1812 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | || |||||| ||| |||||| ||| | | Sbjct 1813 AATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTATCCTGAATCTTCGACTTCACATT 1872 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| ||| || || |||| |||||||| ||||| ||||| || || || Sbjct 1873 GTCGATGGTGTCGGACGACTCGACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTGAC 1932 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 1933 GAAAATCTGCAT 1944 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| ||||| |||||| ||||| ||||| || || | ||| || |||| ||| Sbjct 1280 ACAAGATGTAATGTGGACTCCTTCTGGATGTTGTAATCAGACAAAGTACGGCCGTCCTCG 1339 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| |||| |||||||||||| | || | || |||||| || Sbjct 1340 AGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCTTGA 1399 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| | | | || || ||| || || |||| ||| || || || Sbjct 1400 ATCTTGGACTTGACGTTATCGATGGTATCCGACGACTCGACTTCCAGCGTAATTGTCTTT 1459 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||||||||| Sbjct 1460 CCGGTGAGAGTCTTGACGAAGATTTGCAT 1488 Score = 113 bits (124), Expect = 5e-20 Identities = 167/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420 |||| ||| || | | ||| | ||||| || | || |||||||| ||||| |||||| Sbjct 1028 TATTGGCCACCACGAAGACGGAGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAG 1087 Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480 ||| || || | | | || ||||||||||| ||||| || |||| |||||||||||| Sbjct 1088 TCGCTCAGCGTCCTCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCC 1147 Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGA 46539 | || | | |||||| ||| ||||||| ||||| ||| | | | ||||| || Sbjct 1148 GGTGGGATACCCTCCTTATCCTGGATCTTCGACTTGA-CGTTGTCAATGGTGTCAGAAGA 1206 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || | || ||||| || || |||| || || ||||| || ||||| Sbjct 1207 CTCAACCTCGAGAGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1260 Score = 105 bits (116), Expect = 8e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| ||||| || |||||| || || ||||| ||||| | ||||| | Sbjct 1501 ACGCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGGCC 1560 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| || || || |||| |||||||||||| | || | | |||||| Sbjct 1561 ATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTT 1620 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 || |||||| ||| | ||| | | | || ||| |||||||| || | ||||| Sbjct 1621 ATCTTGAATCTTCGACTTTA-CGTTGTCAATGGTATCGGATGATTCCACCTCAAGCGTGA 1679 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || ||||| || || || || || || ||||| Sbjct 1680 TCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCAT 1716 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || || ||||| |||||||| Sbjct 1981 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTTCCGGCGAA 2040 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| || |||||||| | || | | ||||||||| |||||| |||| | | Sbjct 2041 GATCAGACGTTGCTGGTCCGGGGGGATTCCCTCCTTGTCTTGGATCTTGCTCTTAACATT 2100 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | || ||| || || || || | |||||||| ||||| |||| Sbjct 2101 GTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGTCA 2150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565213430593680