Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2035 244 1e-59 seq415 107 2e-18 seq567 100 4e-16 >seq2035 Length=5668 Score = 244 bits (270), Expect = 1e-59 Identities = 474/692 (68%), Gaps = 12/692 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || || || | ||||| || |||||||| Sbjct 2429 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCAGTGGACTTGACCTCGAAGATACCC 2370 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | | || ||||| || || |||||||| || || || ||||| ||| Sbjct 2369 TCCTCGATGGTGAGGAGAGAGACATCGAAAGTTCCACCACCAAGATCGAAGATGAGAACG 2310 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | || ||||| ||||||||||| || || || || || || || || Sbjct 2309 TTGCGCTCACCCTCGACCTTCTTGTCGAGACCGTAAGCAATGGCAGCGGCGGTAGGCTCG 2250 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| ||| ||| || || || || | ||||| || || || || || Sbjct 2249 TTGATGATACGGAGAACGTTGAGTCCGGCGATCAGACCAGCATCCTTGGTGGCCTGGCGC 2190 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACT-TTCTTACCGAG 7755 || || ||||| ||||| || ||||| || || || |||| |||| ||| | ||||| Sbjct 2189 TGGGAGTCGTTGAAGTAAGCGGGGACGGTGACAACAGCGTTGTTGACGGTTCCT-CCGAG 2131 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 || | || ||| | || ||| ||| || | ||| || || ||||| || | | Sbjct 2130 GTAGGCCTCAGCGGTCTCACGCATCTTGACGAGGATCATGGAGGAGATCTCCTCGGGTGT 2071 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTT--CAATCATGGGTTTATCCGCAGCACCG 7873 || | || || || || || || || || | ||| | ||| ||| || | | | Sbjct 2070 GAAGTCCTTGGTCTCGCCCTTGAACTCGACCTGGCAAAC-TGGCTTT--CCTC--CCTTG 2016 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 ||| | ||| | | | | ||||| ||| | ||||||| ||| | ||||| Sbjct 2015 TCGATGATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGCGTCGGCGAACTTG 1956 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 | ||||| |||||||| || || || || ||||| | ||||||||||| ||||||| Sbjct 1955 CGACCGATCAGACGCTTGGCGTCGAAGACGGTGTTGCTTGGGTTCATGGCGACTTGGTTC 1896 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 || || || || ||||| ||||| || | || || || || ||| |||||||||| Sbjct 1895 TTGGCGGCATCACCGATCAGACGCTC---GGTGTCAGTGAAGGCAACGAACGATGGGGTT 1839 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACG 8113 || || || || |||||||| ||||| || || | |||||| | | ||| || ||| Sbjct 1838 GTGCGGTTGCCCTGGTCGTTGGCAATGATCTCAATGCGGTCATCTCTGAAGATACCCACG 1779 Query 8114 CACGAATACGTTGTTCCTAAATCAATACCGAT 8145 ||||| || || || || ||||| |||||||| Sbjct 1778 CACGAGTAGGTGGTACCCAAATCGATACCGAT 1747 Score = 140 bits (154), Expect = 4e-28 Identities = 254/372 (68%), Gaps = 0/372 (0%) Strand=Plus/Minus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 ||||| || ||||| | || |||||||| || |||||||| ||||| || | || || Sbjct 2924 ATGGCCGCCTGGACGGCAGCACCGTATGCAACAGCCTCATCAGGGTTGATGGACTTGTTG 2865 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 | || || ||||| || || || | | | | || ||| | ||||| || || || Sbjct 2864 GGCTCCTTGCCGTTGAAGTAGTCGGTAATGAGCTTCTGGATTCTGGGGATACGGGTGGAA 2805 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 || ||||| | ||||| || | || || | || |||| ||| | |||| || Sbjct 2804 CCTCCGACGAGGACGATCTCGTGGACCTTGGTCTTGTCGAGCTTGGCGTCTGCGAGGACA 2745 Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 ||||| || | | | |||||| | |||| |||||||||||||| || ||| Sbjct 2744 CGGTCGACGGGCTGGAGAGTGGAACGGAAGAGGTCCTGGCACAGTTCCTCAAAGCGAGCA 2685 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 ||||| || || || |||||||||| || ||| | | || || || || |||| || Sbjct 2684 CGGGTGATTGAGGTGTAGAAATCAATACCCTCGAAGAGAGAGTCGATCTCGATGGAGGTC 2625 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 ||||| | || || | || ||||| || ||||| || || || || | |||||| ||| Sbjct 2624 TGTGCTGAGGACGAAAGAGTGCGCTTGGCACGCTCGCATGCTGTGCGGAGACGACGGAGG 2565 Query 7382 GCACGCGGGTTA 7393 ||||| | |||| Sbjct 2564 GCACGGGCGTTA 2553 >seq415 Length=14565 Score = 107 bits (118), Expect = 2e-18 Identities = 222/327 (68%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||||||| || || || ||||| | || || || || Sbjct 5979 TCGAAATCCTCACCACCCAAGTGGGTGTCACCAGCGGTAGAAAGAACCTCGAAAGCGCCA 5920 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | || ||||| || || || ||||| || || | || | | Sbjct 5919 CGGTCAATGGACAGGAGAGACACATCGAAGGTTCCTCCACCAAGATCGTA---GACAATG 5863 Query 7577 TTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | || || | | | ||||||| |||||||| || | || || || || || || Sbjct 5862 ATC-TGGCGCTCACCATCGGTCTTATCAAGACCGTAGGCAAGGGCGGCGGCGGTAGGCTC 5804 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | ||| || || ||| || |||||||| | | || || || || || |||| Sbjct 5803 GTTGACAATGCGGAGGACGTTAAGTCCAGCAATGATACCAGCGTCCTTGGTGGCCTGTCT 5744 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| |||||||| ||||| || ||||| |||| || || ||||||||||| Sbjct 5743 CTGGTTGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTGGGTAACCTTCTTACCGAG 5684 Query 7756 ATACGATTCCGCGATATCTTTCATTTT 7782 || || || |||| || ||||| || Sbjct 5683 GTAAGACTCAGCGACCTCCTTCATCTT 5657 >seq567 Length=52013 Score = 100 bits (110), Expect = 4e-16 Identities = 200/291 (69%), Gaps = 14/291 (5%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||||||||| || || || ||| | || || || || | ||| Sbjct 10182 ATCGAAATCCTCACCACCCAAGTGAGTGTCACCGTTGGTGGACTTAACCTCGAAAACACC 10241 Query 7516 TCCTTCAATGTTTA-ACAACGAA-ACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 |||| | | | |||| | | ||| || || || |||||||| || | | Sbjct 10242 --CTTCTGGATCTCGAGAACGGAGATATCGAAGGTTCCTCCACCCAGATCGTAGACAGCG 10299 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | | | | || || || ||| || |||||||| |||| ||| || || || || Sbjct 10300 ATGATTCTGTCCTCCTC------CTTCTCCAGACCGTAAGCGAGAGCAGCGGCGGTAGGC 10353 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTT 7691 || |||| | ||| ||| ||||||||||||||| ||| | ||||| || || |||| Sbjct 10354 TCGTTAACGACACGGAGAACGTTCAGGCCAGCAAT--TTGACCGGCATCCTTGGTGGCTT 10411 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGA 7742 | || || || ||||| ||||| || ||||| || || || |||| | ||| Sbjct 10412 GACGCTGGGAGTCGTTGAAGTAAGCTGGGACGGTAACAACGGCGTTCTTGA 10462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635104743008560