Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1566 159 4e-34 seq2400 134 2e-26 seq1548 91.5 2e-13 seq541 89.7 6e-13 seq386 86.0 7e-12 seq2445 84.2 3e-11 >seq1566 Length=8448 Score = 159 bits (176), Expect = 4e-34 Identities = 589/908 (65%), Gaps = 31/908 (3%) Strand=Plus/Minus Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390 ||| || | ||| ||||| |||| ||| || || ||| ||| | ||||||||| || Sbjct 8283 GTACTCGACAATCTCCGTGCACAGGTTAGAGCTGCGGATGGTACCAAGGTTCTTCTGGTT 8224 Query 110391 CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGA 110450 ||| |||||| |||||||| || | |||| | ||| | || || || ||||| || Sbjct 8223 GCTCTTGCGGTTGCAAGCATCCTTGTACAACATGAAAGGGTTTCCTGTCTCAGTCTGAGA 8164 Query 110451 CTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCT 110509 || |||||||| | ||| | | || | ||| || ||| | |||| ||||| | Sbjct 8163 CTCGAGAATGGAGTACCAAAGCTTCTG-GGCCTTGATAGTC----TTGCGAC-CCTTCTT 8110 Query 110510 C-----CTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACC 110564 | |||||| || ||| | |||| || || | ||||| || || | | | | Sbjct 8109 CTCCGACTCGTATTTCTCGTAGAGAGCCTCGAACTCATCACCGTAAACGTCCGCCA-ATC 8051 Query 110565 CTTCGCCTT-GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGA 110623 | || || || ||| || | ||| | ||| | || || |||||| | |||||||| Sbjct 8050 CAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCACCGTTCTTCTCAACACGCTTCATGA 7991 Query 110624 ACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTT 110683 | || || || ||||| | || |||| | ||||||| ||| | || || | || | Sbjct 7990 AGAGATCCGGGATCCAGAGAGCGTAGAACAAGTCACGGGCACGGACTTCCTCCTTGCCGT 7931 Query 110684 GGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAG 110743 |||| | | ||||| || || | || ||| | ||||||||| || | |||| | Sbjct 7930 GGTTCTTCCTCAAGTCCAAGAACTCGAAGACATCAGCGTGCCATGGCTCAACGTAGATGG 7871 Query 110744 CGATGGATCCCTTACGACGA------CCCGCCTGGTTAACATAGCGTGCTGTGGCATTGA 110797 ||| || || | | || || |||||| ||| || | || ||| |||| Sbjct 7870 CGAAGGCACC---AGGGCGCTTGTTGCCACCCTGGTCAACGTATCTGGCAGTGTTGTTGA 7814 Query 110798 AGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT-TCTGGAC 110856 |||| | |||||| |||| || || | || | || || ||||| ||| | || || Sbjct 7813 AGACGCGGAGCATGGGAACGATACCGTTCGAGTTTCCGTTGGTACCGGCAATGTATGCAC 7754 Query 110857 TTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGT 110916 | |||||| || ||||| | || || ||||| || || ||| || Sbjct 7753 CGGT-GGCACGGATACGATGGATGTTCAATCCGATACCTCCGGCAGTCTTTGAGATCATG 7695 Query 110917 GCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAG 110975 ||||| ||| ||||||| |||| ||||| ||||| ||| |||| || | | | Sbjct 7694 GCACATGTCT-TGAGTGTGTCATAGATACCCTCAATACTATCCTCCTTCATGTCGACCAA 7636 Query 110976 AAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATG 111035 ||||| || |||| ||||| | || || || |||||||||||||| || | || || Sbjct 7635 GAAGCAGGATGACAGCTGAGCCTGTGGTGTACCAGCATTGAAGAGTGTTGGGGAGGCGTG 7576 Query 111036 AATGAACAGACCTTGG--GACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTA 111093 ||| || |||| ||||| ||||||||| || | || | ||| | Sbjct 7575 TGTGA--AGTATTTGGAAGACATGAGGTTGTATGTCTCAATGGCCTTCTCAATATCCTCG 7518 Query 111094 CCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCA 111153 |||||||| |||| || || ||||| | ||| | || ||| |||| | || ||| Sbjct 7517 CCGTGAATGCCAACCGCCACACGCATAATCATGTGCTGTGGCCTTTCAGCAACGTTGCCA 7458 Query 111154 TCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAA 111213 |||| || ||||||| ||| |||||||||| ||||| ||| | | |||| Sbjct 7457 TCAAGGCGGAGAAGGTATGAACGCTCAAGGGTCTTGAAGCCAAAATATTGGTAGTTGAAA 7398 Query 111214 TCACGATC 111221 ||||| || Sbjct 7397 TCACGGTC 7390 >seq2400 Length=6790 Score = 134 bits (148), Expect = 2e-26 Identities = 335/504 (66%), Gaps = 21/504 (4%) Strand=Plus/Plus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 ||||||||| || || || | ||||| | || | || |||| | ||| ||| | || Sbjct 3602 ATCGAAACGGCCGGGACGCATAAGAGCCTTGTCCAAAACATCGGGTCTGTTCGTACCCGC 3661 Query 11565 AATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 | || |||| | || ||| ||| |||||||| || ||||| | |||||| | Sbjct 3662 CAGAACAACAACCTGATCCTTCGTGTTGAAGCCGTCCATCTCCGTGAGGATCTGGTTCAG 3721 Query 11625 CGTCTGTTCACGCTCATCGTTG--------GAGGGCATACCAC-CTGCCGAACGCTTCTT 11675 ||| || ||||| || || || | || || | || ||| ||| Sbjct 3722 CGTGCTCTCGCGCTCCTCATTACCGCCTCCGAAGCCAGACTTCTCTCTCGA------CTT 3775 Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGC--ACGTGCCTGT 11733 ||||| |||||||||||| |||||||| | ||||||||| || | | || ||| Sbjct 3776 ACCGATAGCGTCAATCTCGTCGATGAAGATGATACACGG--CGTCGTCTTGCGGGCCATG 3833 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793 |||| || || || |||||| | || ||||| ||||||||||| | ||| | | Sbjct 3834 GCGAACAGGTCGCGCACACGCGAAGGACCGACACCGACGAACATCTCCATGAACTCGGAA 3893 Query 11794 GCA-GAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGT 11852 || || ||||| ||||||||| ||||| || ||| |||| || ||||| || Sbjct 3894 CCACTGACGCTGAA-GAAGGGAACGCCGGACTCGCCGGCGGTGGCCTTCGCTAGGAGGGT 3952 Query 11853 CTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCC 11912 |||||| || || || | ||||| || | || || ||||| |||||||| || | Sbjct 3953 CTTACCAGTTCCGGGAGGACCAGACAGGATAGCACCGCGGGGAATCTTGGCGCCCAGCCT 4012 Query 11913 AAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGA 11972 |||| ||||| ||| |||| |||||| || | |||| | |||| ||| || Sbjct 4013 CGAGTAACGCTCCGGCGTCTTCAGGAAGCTGACGAACTCCATGATTTCCAGCTTTGCCTC 4072 Query 11973 GTCGATACCCTCAACATCGGTGAA 11996 ||| ||||| | ||||||| ||| Sbjct 4073 GTCCATACCAGCCACATCGGCGAA 4096 >seq1548 Length=6717 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 5437 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 5378 Query 136777 GGGAACAGCTTTTAGATATATTTTT 136801 | || ||| | | ||| |||||| Sbjct 5377 GTGACCAGTATATTCATACATTTTT 5353 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 4380 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 4439 Query 136777 GGGAACA 136783 | || || Sbjct 4440 GTGACCA 4446 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 5903 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 5844 Query 136777 GGGAACA 136783 | || || Sbjct 5843 GTGACCA 5837 >seq541 Length=18253 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 3819 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 3760 Query 136777 GGGAACA 136783 |||| || Sbjct 3759 GGGACCA 3753 >seq386 Length=12067 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 6987 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 6928 Query 136777 GGGAACA 136783 | || || Sbjct 6927 GTGACCA 6921 >seq2445 Length=7783 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/231 (69%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || ||||| || ||||||||||| || ||| || |||| |||||| || Sbjct 549 TGGAGACCCTCATCGCGGGAGATGAGCTCGTTGGAGAAAGTCAGGCCAGCCATGAGACCA 490 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| || || | || || || |||||||| ||||| || Sbjct 489 CGCTTCTTGAGCCAGAAAATAGAGGCGAACGAGCCGGAGAAGAAGATACCCTCAACGGCA 430 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCG-AGACTTGTC---GAACCACTTGAGAGC 119683 ||||| || | || |||| || |||||| | | |||||| || |||| ||| ||| Sbjct 429 GCGAAGGCAACCAGGCGCTGGGC-AAAGGTGGAATCCTTGTCTTGGATCCACCTGACAGC 371 Query 119684 CCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 ||||| |||||| || ||||| |||| || | |||||| | ||| || Sbjct 370 CCAGTCGGCCTTCTTCTTGATGCAAGGGATGGTCTCGATGGCATTGAAGAG 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588949981985200