Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1566 230 3e-55 seq2445 125 8e-24 >seq1566 Length=8448 Score = 230 bits (254), Expect = 3e-55 Identities = 624/940 (66%), Gaps = 19/940 (2%) Strand=Plus/Minus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 || ||| |||| ||||| | |||||||| || || || || |||||| | | | | Sbjct 8342 ACGTACGTTGGCAGGGCAAGGGATGCCAAGTTACACACGGCAACCTCATCTGGAGCAGAG 8283 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 ||||| | ||| || || |||| ||| || || || || || | ||||| ||||| Sbjct 8282 TACTCGACAATCTCCGTGCACAGGTTAGAGCTGCGGATGGTACCAAGGTTCTTCTGGTTG 8223 Query 106568 CTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAC 106627 ||||| |||||| ||||||||||| | |||| | || | || ||||| ||||| ||| Sbjct 8222 CTCTTGCGGTTGCAAGCATCCTTGTACAACATGAAAGGGTTTCCTGTCTCAGTCTGAGAC 8163 Query 106628 TTGAGAATTGCCTTCCACA-CATCGGCGGC-TGGTACAATGGCGTTGGCCCGTC-CCTCC 106684 | |||||| | | ||| | | || | | | || || | || | ||| || |||| Sbjct 8162 TCGAGAATGGAGTACCAAAGCTTCTGGGCCTTGATAGTCTTGC---GACCCTTCTTCTCC 8106 Query 106685 GCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGT 106744 | |||||| || |||||| || || ||||| ||||| |||| | | || || Sbjct 8105 GACTCGTATTTCTCGTAGAGAGCCTCGAACTCATCACCGTAAACGTCCGCCAATCCAGG- 8047 Query 106745 GCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAG 106803 || || || || || | |||| ||| | ||| || |||||| ||||||||||| || Sbjct 8046 GCATTCGTTGGGGCACATGAGAGTCCAGTCACCGTTCTTCTCAACACGCTTCATGAAGAG 7987 Query 106804 GTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGT 106862 || || ||||| || | | || | || | ||| || | || || | || |||| Sbjct 7986 ATCCGGGATCCAGAGAGCGTAGAACAAGTCACGGGCACGGA-CTTCCTCCTTGCCGTGGT 7928 Query 106863 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 106922 | | || || | |||||| | || ||| |||||||||||||||| |||| |||| Sbjct 7927 TCTTCCTCAAGTCCAAGAACTCGAAGACATCAGCGTGCCATGGCTCAACGTAGATGGCGA 7868 Query 106923 TAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACG 106978 | || | | | | ||| | || | || || | || ||| ||| || ||| Sbjct 7867 AGGCACCAGGGCGCTTGTTG-CCACCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACG 7809 Query 106979 CGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTG 107038 || ||||| |||| ||||| | || | || || || || ||| | || Sbjct 7808 CGGAGCATGGGAACGATACCGTTCGAGTTTCCGTTGGTACCGGCAATGTATGCACCGGTG 7749 Query 107039 GCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 107098 || | | | |||||||| || || ||||| || || ||||||||| ||||| Sbjct 7748 GCACGGATACGATGGATGTTCAATCCGATACCTCCGGCAGTCTTTGAGATCATGGCACAT 7689 Query 107099 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 107158 | | || || |||||||||| | || |||||||| || ||| | |||||| Sbjct 7688 GTCTTGAGTGTGTCATAGATACCCTCAATACTATCCTCCTTCATGTCGACCAAGAAGCAG 7629 Query 107159 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 107218 |||| ||| | ||||||||||||||||||||| ||||| | ||||| |||| Sbjct 7628 GATGACAGCTGAGCCTGTGGTGTACCAGCATTGAAGAGTGTTGGGGAGGCGTGTGTGAA- 7570 Query 107219 ATACCTTGG--GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGA 107276 || |||| ||||| || ||||||||| | | | ||||| || || ||||| | Sbjct 7569 GTA-TTTGGAAGACATGAGGTTGTATGTCTCAATGGCCTTCTCAATATCCTCGCCGTGAA 7511 Query 107277 TGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCC 107336 |||| | ||||||||||||| ||||| || || |||| | | ||||||| || | Sbjct 7510 TGCCAACCGCCACACGCATAATCATGTGCTGTGGCCTTTCAGCAACGTTGCCATCAAGGC 7451 Query 107337 GTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 | |||| || ||||||||| |||| ||||| || Sbjct 7450 GGAGAAGGTATGAACGCTCAAGGGTCTTGAAGCCAAAATA 7411 >seq2445 Length=7783 Score = 125 bits (138), Expect = 8e-24 Identities = 163/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||||||||||||||| ||||| || || || || ||||| ||||| | ||||||||| Sbjct 550 GTGGAGACCCTCATCGCGGGAGATGAGCTCGTTGGAGAAAGTCAGGCCAGCCATGAGACC 491 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| |||||| | ||| || |||||||||||||||||||| || Sbjct 490 ACGCTTCTTGAGCCAGAAAATAGAGGCGAACGAGCCGGAGAAGAAGATACCCTCAACGGC 431 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATTTCATTG 117463 || || |||| ||||||| ||| |||| | || | |||| | | ||| | | | Sbjct 430 AGCGAAGGCAACCAGGCGCTGGGCAAAGGTG-GAATCCTTGTCTTGGATCCACCTGACAG 372 Query 117464 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 |||| | |||||||||| || || || | || | |||||| Sbjct 371 CCCAGTCGGCCTTCTTCTTGATGCAAGGGATGGTCTCGATGGC 329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589954737598160