Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1566 91.5 2e-13 >seq1566 Length=8448 Score = 91.5 bits (100), Expect = 2e-13 Identities = 369/574 (64%), Gaps = 8/574 (1%) Strand=Plus/Minus Query 47993 GTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGAT 48052 ||| || || |||||||| | ||| ||||| |||| || || ||||||| || | || Sbjct 8214 GTTGCAAGCATCCTTGTACAACATGAAAGGGTTTCCTGTCTCAGTCTGAGACTCGAGAAT 8155 Query 48053 AGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTT 48112 || | ||||| || ||||| ||| | | | || || || |||||||| Sbjct 8154 GGAGTACCAAAGCTTCTGGGCCTTGATAGTCTTGCGACCCTTCTTCTCCGACTCGTATTT 8095 Query 48113 A--GTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTA 48170 ||| | | | ||| || ||||| || || || | | || ||||| ||||| || Sbjct 8094 CTCGTAGAGAGC--CTCGAACTCATCACCGTAAACGTCCGCCAATCCAGGGCATTCGTTG 8037 Query 48171 GGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATC 48230 || ||||| | | ||| || | | || | || | |||| || | ||| || ||| Sbjct 8036 GGGCACATGAGAGTCCAGTCACCGTTCTTCTCAACACGCTTCATGAAGAGATCCGGGATC 7977 Query 48231 CAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTT-AAG 48289 || ||||| || || || | | | | ||| || ||||| ||| | | ||| Sbjct 7976 CAGAGAGCGTAGAACAAGTCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTCCTCAAG 7917 Query 48290 TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGG 48349 | |||||| || | | |||||| |||||||| || | || || || | |||| || Sbjct 7916 TCCAAGAAC-TCGAAGACATCAGCGTGCCATGGCTCAACGTAGATGGCGAAGGCACCAGG 7858 Query 48350 TCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGG 48409 || || || || || || || | ||||||||||| ||||| | || | | ||| || Sbjct 7857 GCGCTTGTTGCCACCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGG 7798 Query 48410 GACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT 48469 || ||||| || || | || ||||| || | ||| || || | || | ||| Sbjct 7797 AACGATACCGTTCGAGTTTCCGTTGGTACCGGCAATGTATGCACCGGTGGCACGGATACG 7738 Query 48470 ACTAAT-TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGG 48528 | || | ||| || ||||| || || | || || || | ||||| || || | Sbjct 7737 ATGGATGTTCAAT-CCGATACCTCCGGCAGTCTTTGAGATCATGGCACATGTCTTGAGTG 7679 Query 48529 TATCATAAATTCCTTCTATACTATCATCTATCAT 48562 | ||||| || || || |||||||| || |||| Sbjct 7678 TGTCATAGATACCCTCAATACTATCCTCCTTCAT 7645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562083968843760