Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2445 127 2e-23 seq872 122 1e-21 seq309 118 1e-20 seq1566 113 6e-19 >seq2445 Length=7783 Score = 127 bits (140), Expect = 2e-23 Identities = 204/287 (71%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || ||||| ||| | |||||| || | ||||| | |||||| || ||||| Sbjct 544 ACCCTCATCGCGGGAGATGAGCTCGTTGGAGAAAGTCAGGCCAGCCATGAGACCACGCTT 485 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| || || | | ||| ||| ||||| ||||| ||||| ||||| || || Sbjct 484 CTTGAGCCAGAAAATAGAGGCGAACGAGCCGGAGAAGAAGATACCCTCAACGGCAGCGAA 425 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCT-CCTTGTTGATCCACTTCATCGCCC 869357 | | | || |||| |||||||||| || || | |||| ||||||| | | |||| Sbjct 424 GGCAACCAGGCGCTGGGCAAAGGTG--GAATCCTTGTCTTG--GATCCACCTGACAGCCC 369 Query 869358 AGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTT 869416 |||||||||| ||| | | | || | || |||||||| ||||||| || | Sbjct 368 AGTCGGCCTTCTTCTTGATGCAAGGGATGGTCTCGATGGCATTGAAGAGGTATGTGC-GC 310 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | |||| | ||||||| || |||||||| ||||| || || ||||| Sbjct 309 TGGGCCTGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTATGTCTC 263 Score = 123 bits (136), Expect = 3e-22 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||| ||| | || ||| |||||| ||||||||||| || | || ||||| |||||| Sbjct 850 GTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCTGCCAGGGAGATGTTCTCCAT 791 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | || ||||||| | ||||||| ||| ||| ||||| || ||||| | Sbjct 790 GAAGTCAAAGGGGTTGGTAGACTTGTAGAACTTCTCGTTACCGAGGGAAAGCAGCAGCCT 731 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 ||||||||| || |||||||| || ||| | | |||||||||||||| ||||| Sbjct 730 GTCGGCGACGAATTCGATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGCAGCGCACA 671 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGA 868931 || || | ||| ||| ||||||| ||||||| |||| |||||| ||||| Sbjct 670 TGGGAGTGCCTCTGTCAAGAACTCTTGCTCGATCGCGACAGCCTCGGTGATGA 618 Score = 105 bits (116), Expect = 8e-17 Identities = 174/249 (70%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694 ||| ||||||||||| ||| ||||| ||||| ||| | |||||| | |||||| Sbjct 259 GTGAATGTTCTCGATCATGATTTGGAAACCGTAGAAGCAGCGAGCCTCTGGGATTTGGAC 200 Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754 ||| | |||| || || ||||||||| || || ||||| |||||||| || Sbjct 199 CTCACTGCTGAAGCGCTCGAGAAGGTTCTCGTTGACAATTCCGTCAGACGCGGCGAAGAA 140 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG-CG--ACACCCAGTGGAC 869811 ||| || ||||| ||| |||| |||||| ||||| |||| || ||||| | Sbjct 139 AGCGAGAACGTGGGAGATGAAGTAGCGCTCATCGTCATTGAGACGGTTGTTCCAGTCGTG 80 Query 869812 GGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 ||| | |||||| | |||||| || ||||||| || || || ||||| ||||| Sbjct 79 AAGGTCCTTGGAGAGGTCAATCTCCTCTGCAGTCCAGAAAGACGCTTCCGCCTTCTTGTA 20 Query 869872 CATCTCCCA 869880 ||||| ||| Sbjct 19 CATCTGCCA 11 >seq872 Length=14839 Score = 122 bits (134), Expect = 1e-21 Identities = 275/409 (67%), Gaps = 12/409 (3%) Strand=Plus/Minus Query 18096 CTTTGGCGAGTCGCACGGGGCGGGCG-TCGGCTGCATCATCGACGGCGTGCCGCCGTGCA 18154 || |||||||||||| | || || | || |||||| |||| ||| || || | | Sbjct 8454 CTATGGCGAGTCGCATTGT-CGCTCGGTGGGATGCATCGTCGATGGCTGCCCCCCAGGAA 8396 Query 18155 TGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCG 18214 || || |||| ||||| |||||||||||| || || |||||||| || ||| ||| Sbjct 8395 TGGAGCTCACCGAAGCCGATATCCAGCCTCAGATGACCCGCCGCCGACCAGGTCAGAGCG 8336 Query 18215 CACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACG 18274 | || | ||||| ||| ||||| || | ||| ||||| || ||||| ||| || Sbjct 8335 CCCTGACGACGCCCCGCGACGAGAAGGACCAAGTCGAAATCCACTCCGGCACCGAGTTCG 8276 Query 18275 GCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCG 18334 || | ||||| ||| | || ||||| | | || ||||| |||||||| ||| | Sbjct 8275 GCGTTACGCTGGGCACCCCGATCGGCATGCTCGTCCGCAACCAGGACCAGCGCCCCAAGG 8216 Query 18335 ACTATTCCGACA-TGTGCAAGG-------TGCCGCGGCCCTCACACGCCGACTACACCTA 18386 | || | || | | | | | | | || || || || || ||||||| || || Sbjct 8215 ATTA--CGGAAACTCTACCATGGATCTCTTCCCTCGCCCATCGCATGCCGACTGGACATA 8158 Query 18387 CATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGAC 18446 | | | ||||||||| ||||||| |||||||| || || || ||||||||||| Sbjct 8157 CCTCGAGAAGTACGGCGTCAAGGCCAGCTCGGGCGGCGGGCGCAGCTCCGCCCGCGAGAC 8098 Query 18447 CCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAAATGGCTCGGTCTC 18495 | | | || || || || ||| | || ||||||| || ||||| Sbjct 8097 CATTGGAAGAGTGGCGGCGGGTGCGATTGCGGAGAAATACCTGCGTCTC 8049 Score = 104 bits (114), Expect = 3e-16 Identities = 118/157 (75%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||||||| ||||| || || || || ||||| || |||||||||||| Sbjct 7826 GACAGCATCGGTGGCACTGTCACCTGTGTCATCAAGAACGTCCCCAGTGGCCTCGGCGAG 7767 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||| |||||||| || ||| |||||||||||||||||| ||||| |||||| Sbjct 7766 CCCTGCTTCGACAAGATGGAAGCCATGCTCGCCCACGCCATGCTCAGCATCCCCGCCACC 7707 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGCG 19202 ||||| || ||| | || ||| || |||| |||| Sbjct 7706 AAGGGCTTTGAGGTCGGATCCGGCTTCGGCGGTTGCG 7670 >seq309 Length=11340 Score = 118 bits (130), Expect = 1e-20 Identities = 125/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 1592132 TGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGC 1592190 |||||| || |||| ||| | ||||| || | || || ||| | ||||| || | Sbjct 9243 TGGGACCAGAAGTTCATGC-AGGTCGACCAAGAGATGCTGTTCGAGATCATCCTGGCATC 9185 Query 1592191 CAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGAT 1592250 ||||||||| ||||||||||| ||||||||| | || |||||| | ||||| || ||||| Sbjct 9184 CAACTACCTGGACATCAAGCCGCTGCTCGATGTCGGATGCAAGACGGTGGCGAATATGAT 9125 Query 1592251 CAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||| ||||| || ||||||||| | ||||| ||||| || Sbjct 9124 TAAGGGAAAGTCTCCGGAGGAGATCAGGAAGACGTTTAATAT 9083 >seq1566 Length=8448 Score = 113 bits (124), Expect = 6e-19 Identities = 182/259 (70%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| ||||| | || |||| ||| ||||||||||||||||| |||| ||||| || Sbjct 7842 CTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAACGATACCGTTCGA 7783 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | |||||||| || || | ||| || |||| ||| || | || | || || Sbjct 7782 GTTTCCGTTGGTACCGGCAATGTATGCACCGGTGGCACGGATACGATGGATGTTCAATCC 7723 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCCT 1630243 ||| || ||||| | ||| ||||| | || || ||| ||||| ||||| ||||| |||| Sbjct 7722 GATACCTCCGGCAGTCTTTGAGATCATGGCACA-TGTCTTGAGTGTGTCATAGATACCCT 7664 Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303 | || || |||||||||| || | ||||| || || || | || | || | Sbjct 7663 CAATACTATCCTCCTTCATGTCGACCAAGAAGCAGGATGACAGCTGAGCCTGTGGTGTAC 7604 Query 1630304 CGGCGTTGAAGAGCGTGGG 1630322 | || |||||||| || || Sbjct 7603 CAGCATTGAAGAGTGTTGG 7585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106849183410278