Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2445 149 1e-29 seq309 113 7e-19 seq1566 91.5 2e-12 seq1344 87.8 3e-11 >seq2445 Length=7783 Score = 149 bits (164), Expect = 1e-29 Identities = 211/292 (72%), Gaps = 5/292 (2%) Strand=Plus/Minus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 ||||| | |||||| || |||||||||||||| || || | ||| ||| ||||| Sbjct 507 AGGCCAGCCATGAGACCACGCTTCTTGAGCCAGAAAATAGAGGCGAACGAGCCGGAGAAG 448 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 ||||| ||||| ||||| || ||| | || || |||| |||||| ||| | || | | Sbjct 447 AAGATACCCTCAACGGCAGCGAAGGCAACCAGGCGCTGGGCAAAGGTGG--AATCCTTGT 390 Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 | | ||||||| | | ||||| || ||||| ||| | | | || | || |||||| Sbjct 389 CT-TGGATCCACCTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATGGTCTCGATG 331 Query 794557 GCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGA 794615 || ||||||| || | || | || | ||||||| ||| |||||||||||||| || Sbjct 330 GCATTGAAGAGGTATGTGCG-CTGGGCCTGCTCCTTGATGTATGTGTCGATGAGGAGGGA 272 Query 794616 GTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||| ||||| | ||| ||||| ||||| ||| ||||| || || |||||| Sbjct 271 GTATGTCTCGGCGTGAATGTTCTCGATCATGATTTGGAAACCGTAGAAGCAG 220 Score = 125 bits (138), Expect = 1e-22 Identities = 169/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || ||| | || ||| |||||| ||||||||||| || | || ||||| |||||| Sbjct 849 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCTGCCAGGGAGATGTTCTCCATG 790 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 | || ||||||| | | |||| ||||||| ||||| || ||||| | | Sbjct 789 AAGTCAAAGGGGTTGGTAGACTTGTAGAACTTCTCGTTACCGAGGGAAAGCAGCAGCCTG 730 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CAC 794086 |||||||||||||| ||||| || ||| | | |||||||||||||| ||||| || Sbjct 729 TCGGCGACGAATTCGATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGCAGCGCACAT 670 Query 794087 GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGA 794139 ||| || | ||| | | ||||||| ||||||| |||| |||||| |||||| Sbjct 669 GGG-AGTGCCTCTGTCAAGAACTCTTGCTCGATCGCGACAGCCTCGGTGATGA 618 >seq309 Length=11340 Score = 113 bits (124), Expect = 7e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 ||||||||||| | || || ||| | ||||| || |||||||||| |||||||||| Sbjct 9224 AGGTCGACCAAGAGATGCTGTTCGAGATCATCCTGGCATCCAACTACCTGGACATCAAGC 9165 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 | || |||||| | || |||||||| ||||| || | || ||||| ||||| || |||| Sbjct 9164 CGCTGCTCGATGTCGGATGCAAGACGGTGGCGAATATGATTAAGGGAAAGTCTCCGGAGG 9105 Query 2035732 ACATCCGCAAGACCTTTAACAT 2035753 | ||| | ||||| ||||| || Sbjct 9104 AGATCAGGAAGACGTTTAATAT 9083 >seq1566 Length=8448 Score = 91.5 bits (100), Expect = 2e-12 Identities = 175/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| || || | || |||| ||| ||||||||||||||||| || | ||||| || Sbjct 7842 CTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAACGATACCGTTCGA 7783 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | |||||||| || || | ||| || || | ||| || | || | || || Sbjct 7782 GTTTCCGTTGGTACCGGCAATGTATGCACCGGTGGCACGGATACGATGGATGTTCAATCC 7723 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || ||||| | ||| ||||| | || || | || || || || ||||| ||||| Sbjct 7722 GATACCTCCGGCAGTCTTTGAGATCATGGCACATGTCTTGAGTGTGTCATAGATACCCTC 7663 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || || |||||||||| | || ||||| || || || | | | || || Sbjct 7662 AATACTATCCTCCTTCATGTCGACCAAGAAGCAGGATGACAGCTGAGCCTGTGGTGTACC 7603 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 ||||||||||| || || Sbjct 7602 AGCATTGAAGAGTGTTGG 7585 >seq1344 Length=13974 Score = 87.8 bits (96), Expect = 3e-11 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 2019204 GGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAG 2019263 || ||||| ||| | |||| ||||| ||||||||| || | || || | ||||| || Sbjct 5758 GGACGCCAAAAGCTTGTCATTCTCGACGAGGCCGACAGCATGACATCCGGTGCCCAACAA 5699 Query 2019264 GCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAAC 2019323 |||||||| || ||||| | ||| | || || || ||||| | || |||||| Sbjct 5698 GCCCTCCGCCGCACTATGGAGATATACTCGTCGACCACCCGCTTTGCATTTGCGTGCAAC 5639 Query 2019324 ACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGC 2019383 ||| | | | ||||| |||| || | || ||||||||||||| ||| | Sbjct 5638 CAGTCCAACAAGATAATCGAGCCCCTGCAATCGAGATGTGCCATCTTGCGCTATGCAAGG 5579 Query 2019384 CTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439 || || || || || ||| |||||| | | |||||||||| || || ||||| Sbjct 5578 CTAACAGATGCACAAGTCGTGAAGCGTCTTCTCCAGATTATCGAGGCAGAGAAGGT 5523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915870472301426