Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1054 105 2e-17 seq335 96.9 8e-15 >seq1054 Length=16682 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || || ||||||||||| || || || ||| Sbjct 1941 CAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTCGAGTCGTCCGAC 1882 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || ||| |||||| || Sbjct 1881 ACCATCGACAATGTGAAGTCGAAGATTCAGGATAAGGAGGGCATTCCTCCGGACCAGCAG 1822 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||| |||||||||||||| ||||| | ||| || |||| |||||| | Sbjct 1821 CGCCTGATTTTCGCAGGAAAGCAGTTGGAGGATGGTCGCACTCTGTCCGACTACAACATT 1762 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| ||||| ||| Sbjct 1761 CAGAAGGAGTCGACTCTCCAC 1741 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || |||||||| | || |||||| || || Sbjct 1713 CAGATTTTCGTCAAGACCCTTACGGGGAAGACGATCACGCTTGAGGTGGAATCATCCGAT 1654 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| ||||||||||| || || || ||| |||||| || Sbjct 1653 ACCATTGACAACGTAAAGTCGAAGATTCAAGATAAGGAGGGTATTCCTCCGGACCAGCAG 1594 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| |||| ||||| | || ||| ||||||||||| | Sbjct 1593 CGCCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCTTGTCCGATTACAACATT 1534 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| ||||| || || || Sbjct 1533 CAGAAGGAGTCCACCCTGCA 1514 Score = 87.8 bits (96), Expect = 4e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| ||||| || || || ||||||| || || || || |||| Sbjct 1474 CAAGACTCTCACCGGAAAGACAATTACGCTGGAAGTCGAGTCGTCGGATACCATCGATAA 1415 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||||||||| || || || || |||||| || | || || || Sbjct 1414 CGTCAAGTCCAAGATTCAAGATAAGGAGGGCATCCCACCGGACCAGCAGCGCCTGATTTT 1355 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| | || || || | |||||| | ||||||||| ||||||| ||||| Sbjct 1354 CGCGGGCAAGCAGCTCGAGGACGGCCGTACTTTGTCTGATTACAACATCCAGAAGGAGTC 1295 Query 206364 TACTCTTCACCTTGTT 206379 || | || |||||| Sbjct 1294 CACATTACATCTTGTT 1279 >seq335 Length=36749 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || ||||| || ||||| |||| Sbjct 30217 AAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACTATCGACAAT 30276 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || |||||| |||||| || | || |||||| Sbjct 30277 GTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGCCTGATCTTC 30336 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || ||||| | || | | || |||||| ||||||| ||||| Sbjct 30337 GCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCC 30396 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | || ||||||||||| Sbjct 30397 ACCCTTCACTTGGTCTTGAGACTTCG 30422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181767287892814