Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2445 208 1e-47 seq1566 111 2e-18 >seq2445 Length=7783 Score = 208 bits (230), Expect = 1e-47 Identities = 358/507 (71%), Gaps = 12/507 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||| || || || || ||||| || |||||| | |||| Sbjct 7 GATCTGGCAGATGTAC-AAGAAGGCGGAAGCGTCTTTCTGGACTGCAGAGGAGATTGACC 65 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTCATCA 1455891 || | ||| | ||||| || || | ||||| |||||| | |||||| Sbjct 66 TCTCCAAGGACCTTCACGACTGGAACAACCGTCTCAATGACGATGAGCGCTACTTCATCT 125 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||| ||||| ||| |||||||| || || || || ||||||||| || Sbjct 126 CCCACGTTCTCGC-TTTCTTCGCCGCGTCTGACGGAATTGTCAACGAGAACCTTCTCGAG 184 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | | ||||||||| | |||||||| || | || ||||| ||||| ||| Sbjct 185 CGCTTCAGCAGTGAGGTCCAAATCCCAGAGGCTCGCTGCTTCTACGGTTTCCAAATCATG 244 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 ||||| ||||| ||| | || || ||||| ||||| |||||||| ||| ||||||| | | Sbjct 245 ATCGAGAACATTCACGCCGAGACATACTCCCTCCTCATCGACACATACATCAAGGAGCAG 304 Query 1456072 GTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | | || | || ||||||| |||||||| || | || | | | ||| ||||| Sbjct 305 GCCCAGC-GCACATACCTCTTCAATGCCATCGAGACCATCCCTTGCATCAAGAAGAAGGC 363 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAG-GAGGGCCTCGACACTTTGCCGAGCGGCTCGT 1456189 ||||||||| | | ||||||| |||| | || || || ||||||| |||| || || Sbjct 364 CGACTGGGCTGTCAGGTGGATC--CAAGACAAGGATTCCAC-CTTTGCCCAGCGCCTGGT 420 Query 1456190 CGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCT 1456248 | ||| || | ||| ||||| ||||| ||||| ||| ||| | | || || ||||| Sbjct 421 TGCCTTCGCTGCCGTTGAGGGTATCTTCTTCTCCGGCTCGTTCGCCTCTATTTTCTGGCT 480 Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||| || |||||| | || || Sbjct 481 CAAGAAGCGTGGTCTCATGGCTGGCCT 507 Score = 89.7 bits (98), Expect = 7e-12 Identities = 153/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 1456524 TCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGC 1456583 ||||| |||||| |||| ||||||| ||||||| | | ||| | || || |||| Sbjct 618 TCATCACCGAGGCTGTCGCGATCGAGCAAGAGTTCTTGACAGAGGCACTCCCATGTGCGC 677 Query 1456584 TCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCT 1456643 | ||||||||||||||| | | ||| || ||||| ||| || ||||||||| | || Sbjct 678 TGCTCGGCATGAACGCCAAC-TTGATGAAGCAATACATCGAA-TTCGTCGCCGACAGGCT 735 Query 1456644 GCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGG 1456703 ||| | ||||| | |||||| |||| | | ||||||| || | |||| Sbjct 736 GCTGCTTTCCCTCGG-TAACGAGAAGTTCTACAAGTCTACCAACCCCTTTGACTTCATGG 794 Query 1456704 AGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 || ||||| || | || ||||||||||| |||||| Sbjct 795 AGAACATCTCCCTGGCAGGAAAGACCAACTTCTTCGAG 832 >seq1566 Length=8448 Score = 111 bits (122), Expect = 2e-18 Identities = 183/262 (70%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 || || ||||| ||||| || || || | | ||| || || ||||| || | ||| Sbjct 7585 CCAACACTCTTCAATGCTGGTACACCACAGGCTCAGCTGTCATCCTGCTTCTTGGTCGAC 7644 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| ||| || ||||| ||||||||||| |||||| || || | ||||| Sbjct 7645 ATGAAGGAGGATAGTATTGAGGGTATCTATGACACACTCAAGACATGTGCCATGATCTCA 7704 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACA--CAAGG--TGCGCGCCGCGGGCGCCTA 260100 ||| | ||||| || ||||| || | ||| || | | || ||| | || || || Sbjct 7705 AAGACTGCCGGAGGTATCGGATT----GAACATCCATCGTATCCGTGCCACCGGTGCATA 7760 Query 260101 CGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGA 260160 | | || || |||||||| | || ||||| | || |||||||| ||||| || ||| | Sbjct 7761 CATTGCCGGTACCAACGGAAACTCGAACGGTATCGTTCCCATGCTCCGCGTCTTCAACAA 7820 Query 260161 CACGGCGCGCTACGTCGACCAG 260182 ||| || | ||||| |||||| Sbjct 7821 CACTGCCAGATACGTTGACCAG 7842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177470339204508