Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1566 205 1e-47 seq2445 109 8e-19 >seq1566 Length=8448 Score = 205 bits (226), Expect = 1e-47 Identities = 523/785 (67%), Gaps = 16/785 (2%) Strand=Plus/Minus Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 ||| || || || || | ||| || ||||| ||| || || |||||||| | || || Sbjct 8247 GATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCATCCTTGTACAACATGAA 8188 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 || | || || ||| ||||||| |||| ||| || | ||||| | || || || Sbjct 8187 AGGGTTTCCTGTCTCAGTCTGAGACTCGAGAATGGAGTACCAAAGCTTCTGGGCCTTGAT 8128 Query 69471 TACGGTCTTGTAACGCTTCTCTTTT---TCATATTGT--GTATATAGCCGTTCGAATTCA 69525 |||||| || ||||| | || |||| ||| | |||| ||||| ||| Sbjct 8127 A---GTCTTGCGACCCTTCTTCTCCGACTCGTATTTCTCGTAGAGAGCC--TCGAACTCA 8073 Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585 || || |||| || |||||||||| ||||| || || ||||| | | ||| || | Sbjct 8072 TCACCGTAAACGTCCGCCAATCCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCACCG 8013 Query 69586 TCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCT 69644 | | || ||| || ||||| || ||||| || ||||| ||||| || || || || | Sbjct 8012 TTCTTCTCAACACGCTTCATGAAGAGATCCGGGATCCAGAGAGCGTAGAACAAG-TCACG 7954 Query 69645 GGTTCTATTTTCTTCATTTCC-TGTAttttttttAAGATCGAGAAACTCCATAATATCAG 69703 || | ||| || || || || | || | ||| | |||| ||| | | ||||| Sbjct 7953 GGCACGGACTTCCTCCTTGCCGTGGTTCTTCCTCAAGTCCAAGAA-CTCGAAGACATCAG 7895 Query 69704 AATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTA 69763 |||||||| || | || || || | | | || || || || || || ||||| || | Sbjct 7894 CGTGCCATGGCTCAACGTAGATGGCGAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCAA 7835 Query 69764 TGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCAT 69823 ||||||||||||||| || |||| | ||||| |||| ||||| || || || || | Sbjct 7834 CGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAACGATACCGTTCGAGTTTCCGT 7775 Query 69824 TTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTC 69883 | || || | ||| || || | || || ||| | || | || || |||| Sbjct 7774 TGGTACCGGCAATGTATGCACCGGTGGCACGGATACGATGGATGTTCAATCCGATACCTC 7715 Query 69884 CTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTAT 69943 | || | || ||||| | ||||| || | ||||||||| |||||||| || |||| Sbjct 7714 CGGCAGTCTTTGAGATCATGGCACATGTCTTGAGTGTGTCATAGATACCCTCAATACTAT 7655 Query 69944 CATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAA 70003 | || |||||| | | || ||| |||| ||| ||| || || ||||| | Sbjct 7654 CCTCCTTCATGTCGACCAAGAAGCAGGATGACAGCTGAGCCTGTGGTGTACCAGCATTGA 7595 Query 70004 ATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAG 70063 | | ||| || || ||||| ||||| |||| ||| | || |||||||| ||||| | Sbjct 7594 AGAGTGTTGGGGAGGCGTGTGTGAAGTATTTGGAAGACATGAGGTTGTATGTCTCAATGG 7535 Query 70064 CTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGT 70122 | || |||||| | | | ||||| || | ||| |||||||| | ||| ||||| || Sbjct 7534 CCTTCTCAATATCCTCGCCG-TGAATGCCAACCGCCACACGCATAATCATGTGCTGTGGC 7476 Query 70123 CGTTC 70127 | ||| Sbjct 7475 CTTTC 7471 >seq2445 Length=7783 Score = 109 bits (120), Expect = 8e-19 Identities = 174/249 (70%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||||||||||||| || || |||||||| | || | ||||| || || || || Sbjct 565 GCAGGCGAAGTCAGTGTGGAGACCCTCATCGCGGGAGATGAGCTCGTTGGAGAAAGTCAG 506 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||| ||| ||||||||||| |||||||| || || | || || || || || ||||| Sbjct 505 GCCAGCCATGAGACCACGCTTCTTGAGCCAGAAAATAGAGGCGAACGAGCCGGAGAAGAA 446 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT---ATG 39792 ||| || || || || || || ||||| || | || | | | | ||| || || Sbjct 445 GATACCCTCAACGGCAGCGAAGGCAACCAGGCGCTGGGCAAAGGTGGAATCCTTGTCTTG 386 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 |||||| | ||||| || || |||||||| | ||||| || || || || ||||| Sbjct 385 GATCCACCTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATGGTCTCGATGGCATT 326 Query 39853 AAAGAGATA 39861 ||||| || Sbjct 325 GAAGAGGTA 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686878455803760