Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1566 215 6e-51 seq2445 120 4e-22 >seq1566 Length=8448 Score = 215 bits (238), Expect = 6e-51 Identities = 621/940 (66%), Gaps = 19/940 (2%) Strand=Plus/Minus Query 111221 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 111280 || ||| |||| ||||| | |||||||| || || || || |||||| | | | | Sbjct 8342 ACGTACGTTGGCAGGGCAAGGGATGCCAAGTTACACACGGCAACCTCATCTGGAGCAGAG 8283 Query 111281 TACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 111340 ||||| | ||| || || || | ||| || || || || || | ||||| ||||| Sbjct 8282 TACTCGACAATCTCCGTGCACAGGTTAGAGCTGCGGATGGTACCAAGGTTCTTCTGGTTG 8223 Query 111341 CTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAT 111400 ||||| |||||| ||||||||||| | |||| | || | || ||||| ||||| || Sbjct 8222 CTCTTGCGGTTGCAAGCATCCTTGTACAACATGAAAGGGTTTCCTGTCTCAGTCTGAGAC 8163 Query 111401 TTGAGAATAGCCTTCCAAA-CATCGGCGGC-TGGTACAATGGCGTTGGCCCGTC-CCTCC 111457 | |||||| | | ||||| | || | | | || || | || | ||| || |||| Sbjct 8162 TCGAGAATGGAGTACCAAAGCTTCTGGGCCTTGATAGTCTTGC---GACCCTTCTTCTCC 8106 Query 111458 GCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGT 111517 | |||||| || |||||| || || ||||| ||||| |||| | | || || Sbjct 8105 GACTCGTATTTCTCGTAGAGAGCCTCGAACTCATCACCGTAAACGTCCGCCAATCCAGG- 8047 Query 111518 GCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAG 111576 || || || || || | |||| ||| | ||| | |||||| ||||||||||| || Sbjct 8046 GCATTCGTTGGGGCACATGAGAGTCCAGTCACCGTTCTTCTCAACACGCTTCATGAAGAG 7987 Query 111577 GTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGT 111635 || || ||||| || | | || | || | ||| || | || || | || |||| Sbjct 7986 ATCCGGGATCCAGAGAGCGTAGAACAAGTCACGGGCACGGA-CTTCCTCCTTGCCGTGGT 7928 Query 111636 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 111695 | | || || | |||||| | || ||| |||||||||||||||| |||| |||| Sbjct 7927 TCTTCCTCAAGTCCAAGAACTCGAAGACATCAGCGTGCCATGGCTCAACGTAGATGGCGA 7868 Query 111696 TAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACG 111751 | || | | | | ||| | || | || || | || ||| ||| || ||| Sbjct 7867 AGGCACCAGGGCGCTTGTTG-CCACCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACG 7809 Query 111752 CGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTG 111811 || ||||| |||| ||||| | || | || || || || ||| | || Sbjct 7808 CGGAGCATGGGAACGATACCGTTCGAGTTTCCGTTGGTACCGGCAATGTATGCACCGGTG 7749 Query 111812 GCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 111871 || | | | |||||||| || || ||||| || || ||||||||| ||||| Sbjct 7748 GCACGGATACGATGGATGTTCAATCCGATACCTCCGGCAGTCTTTGAGATCATGGCACAT 7689 Query 111872 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 111931 | | || || |||||||||| | || |||||||| || ||| | |||||| Sbjct 7688 GTCTTGAGTGTGTCATAGATACCCTCAATACTATCCTCCTTCATGTCGACCAAGAAGCAG 7629 Query 111932 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 111991 |||| ||| | ||||||||||||||||||||| ||||| | ||||| |||| Sbjct 7628 GATGACAGCTGAGCCTGTGGTGTACCAGCATTGAAGAGTGTTGGGGAGGCGTGTGTGAA- 7570 Query 111992 ATACCTTGG--GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGA 112049 || |||| ||||| || ||||||||| | | | ||||| || || ||||| | Sbjct 7569 GTA-TTTGGAAGACATGAGGTTGTATGTCTCAATGGCCTTCTCAATATCCTCGCCGTGAA 7511 Query 112050 TGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCC 112109 |||| | || || ||||| | ||||| |||||| |||| | | ||||||| || | Sbjct 7510 TGCCAACCGCCACACGCATAATCATGTGCTGTGGCCTTTCAGCAACGTTGCCATCAAGGC 7451 Query 112110 GTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 | |||| || ||||||||| |||| ||||| || Sbjct 7450 GGAGAAGGTATGAACGCTCAAGGGTCTTGAAGCCAAAATA 7411 >seq2445 Length=7783 Score = 120 bits (132), Expect = 4e-22 Identities = 338/511 (66%), Gaps = 11/511 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||||||||||||||| ||||| || || || || ||||| || || | ||||||||| Sbjct 550 GTGGAGACCCTCATCGCGGGAGATGAGCTCGTTGGAGAAAGTCAGGCCAGCCATGAGACC 491 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| |||||| | ||| || |||||||||||||||||||| || Sbjct 490 ACGCTTCTTGAGCCAGAAAATAGAGGCGAACGAGCCGGAGAAGAAGATACCCTCAACGGC 431 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || |||| ||||| | ||| |||| | | ||| | | | ||| | | || Sbjct 430 AGCGAAGGCAACCAGGCGCTGGGCAAAGGTGGAATCCTTGTCTTGGATCCACCTGACAGC 371 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTT 122909 ||| | |||||||||| || || || | || | |||||| | || | | | | Sbjct 370 CCAGTCGGCCTTCTTCTTGATGCAAGGGATGGTCTCGATGGCATTGAAGA--GGTATGTG 313 Query 122910 TTCAGATCC--ATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACC 122967 | | || ||||| |||||| |||| || | || ||||| ||| | |||| Sbjct 312 CGCTGGGCCTGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTATGTCTCGGCGTGAATG 253 Query 122968 ATTTC-ATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATC 123026 | || || || | ||| | ||||||| |||| || || || || |||||| | Sbjct 252 TTCTCGATCAT-GATTTGGAAACCGTAGAAGCAGCGAGCCTCTGGGATTTGGACCTCA-C 195 Query 123027 CGCAAAATTGTTATTG-ATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCA 123085 || || | | | | ||||| |||||||| || ||| | || ||||| || | Sbjct 194 TGCTGAAGCGCTCGAGAAGGTTCTCGTTGACAATTCCGTCAGACGCGGCGAAGAAAGCGA 135 Query 123086 GGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAGTCGTCAAGAT 123142 | | || ||||| | |||| ||||| | || | |||||||||| ||| | Sbjct 134 GAACGTGGGAGATGAAGTAGCGCTCATCGTCATTGAGACGGTTGTTCCAGTCGTGAAGGT 75 Query 123143 CTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 | ||||| | |||| || || |||||||| Sbjct 74 CCTTGGAGAGGTCAATCTCCTCTGCAGTCCA 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628004256686400