Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1566 219 5e-52 seq2493 123 3e-23 seq2445 123 3e-23 >seq1566 Length=8448 Score = 219 bits (242), Expect = 5e-52 Identities = 624/946 (66%), Gaps = 25/946 (3%) Strand=Plus/Plus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGTGTC-TTGAT 104214 |||||||| |||| ||||||||| || |||| || || ||||| | ||| | Sbjct 7411 TATTTTGGCTTCAAGACCCTTGAGCGTTCATACCTTCTCCGCCTTGATGGCAACGTTGCT 7470 Query 104215 GGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGA 104274 | ||| |||||| ||||| | ||||| ||||| | || ||||| || || || ||||| Sbjct 7471 G-AAAGGCCACAGCACATGATTATGCGTGTGGCGGTTGGCATTCACGGCGAGGATATTGA 7529 Query 104275 TTCTGTCTTGGAGACATACGACAAGATGTC--CCAAGGTATGTTCATTCACGCAACACCA 104332 | | | ||||||||| || ||||| |||| || |||| ||||| | ||| Sbjct 7530 GAAGGCCATTGAGACATACAACCTCATGTCTTCCAAA-TAC-TTCACACACGCCTCCCCA 7587 Query 104333 ACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAAC 104392 || ||||||||||||||||||||| | || |||| |||||| | ||| || Sbjct 7588 ACACTCTTCAATGCTGGTACACCACAGGCTCAGCTGTCATCCTGCTTCTTGGTCGACATG 7647 Query 104393 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 104452 |||||||| || | |||||||||| || || | | ||||| ||||||||| Sbjct 7648 AAGGAGGATAGTATTGAGGGTATCTATGACACACTCAAGACATGTGCCATGATCTCAAAG 7707 Query 104453 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 104512 || || ||||| || || |||||||| | | | |||| | ||| Sbjct 7708 ACTGCCGGAGGTATCGGATTGAACATCCATCGTATCCGTGCCACCGGTGCATACATTGCC 7767 Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572 || || || || | || | ||||| |||| ||||| ||||| || ||| ||| || Sbjct 7768 GGTACCAACGGAAACTCGAACGGTATCGTTCCCATGCTCCGCGTCTTCAACAACACTGCC 7827 Query 104573 CGCTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCC 104628 | || || | || | ||| | | | | || | |||| |||| ||||||| Sbjct 7828 AGATACGTTGACCAGGGTGG-CAACAAGCGCCCTGGTGCCTTCGCCATCTACGTTGAGCC 7886 Query 104629 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGC 104688 ||||||||| ||| || | |||||| | || ||| | ||||| || | ||||| | Sbjct 7887 ATGGCACGCTGATGTCTTCGAGTTCTTGGACTTGAGGAAGAACCACGGCAAGGAGGAAGT 7946 Query 104689 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 104748 || ||| || | |||| |||||||||||| || ||||||||||||||| | ||||| Sbjct 7947 CCGTGCCCGTGACTTGTTCTACGCTCTCTGGATCCCGGATCTCTTCATGAAGCGTGTTGA 8006 Query 104749 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCG 104807 | ||| || | ||| ||||| | || || || || || ||||| | | || | Sbjct 8007 GAAGAACGGTGACTGGACTCTCATGTGCCCCAACGAATGC-CCTGGATTGGCGGACGTTT 8065 Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG-----GAAGAA-GGTCGGGCGA 104861 ||||| ||||| || || || ||| || |||||| |||||| ||||| || Sbjct 8066 ACGGTGATGAGTTCGAGGCTCTCTACGAGAAATACGAGTCGGAGAAGAAGGGTCGCAAGA 8125 Query 104862 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921 || | || |||| || | ||| | | |||||| ||||||| || ||||| | Sbjct 8126 CTATCAAGG-CCCAGAAGC-----TTTGGTACTCCATTCTCGAGTCTCAGACTGAGACAG 8179 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 104981 | | || | |||| | ||||| || || || |||| ||||| || || ||||| | | Sbjct 8180 GAAACCCTTTCATGTTGTACAAGGATGCTTGCAACCGCAAGAGCAACCAGAAGAACCTTG 8239 Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 105041 || ||| || || || || || || || || | || | | | ||||||| Sbjct 8240 GTACCATCCGCAGCTCTAACCTGTGCACGGAGATTGTCGAGTACTCTGCTCCAGATGAGG 8299 Query 105042 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA 105087 || ||||||||| | ||||| | || || || | ||| || || Sbjct 8300 TTGCCGTGTGTAACTTGGCATCCCTTGCCCTGCCAACGTACGTTGA 8345 >seq2493 Length=2855 Score = 123 bits (136), Expect = 3e-23 Identities = 269/392 (69%), Gaps = 18/392 (5%) Strand=Plus/Plus Query 105215 CACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTC----G 105270 ||| | ||| ||| | ||||||| |||||||| || |||| ||||||| | | | Sbjct 73 CACAGACCAGTTGCTGTCGGTGTCCAGGGTCTTGCTGATG----CATTCTTGGCCCTCCG 128 Query 105271 CCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTA 105330 || | || |||||| ||| || ||| | |||| | | || ||||||||||| || Sbjct 129 CCTGCCCTTCGATTCCCCCGAGGCTAAGCACCTCAACTCCCAGATCTTTGAGACCATTTA 188 Query 105331 TCACGCCGCTCTTGA-GGCG--AGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAAC 105387 |||| |||| |||| ||| ||| ||| |||| || || | || |||| || || Sbjct 189 CCACGGCGCT-TTGACTGCGTCCGTT--GAGCTGGCCCAGATTCACGGCACATACGAGAC 245 Query 105388 CTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGA 105446 || ||||| ||||||| || |||||| | ||| |||| |||||||||| || | Sbjct 246 CTACGAGGGATCTCCAGTGTC-CAAGGGCGAGCTCCAATACGATATGTGGG-GCGTCACC 303 Query 105447 CCAAGC-TTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGT 105505 || | | | | |||||||| ||||||||| | |||||| || | ||| | || Sbjct 304 CCTACCGACCTGTGGGACTGGGACTCTCTCAAGGTCCAGATCAAGCAGCACGGTGTCCGC 363 Query 105506 AACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 105565 ||| || ||| | || || ||||| || || |||||| | || || | || || Sbjct 364 AACTCCCTTCTCGTTGCACCCATGCCCACTGCTTCCACCTCCCAGATTCTCGGCTTCAAC 423 Query 105566 GAATGCTTTGAACCCTACACGACGAACATCTA 105597 || ||||| || || ||||| |||||||||| Sbjct 424 GAGTGCTTCGAGCCATACACCTCGAACATCTA 455 >seq2445 Length=7783 Score = 123 bits (136), Expect = 3e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 ||||| | |||||| | || | || || || | ||||| || || |||||| | | | Sbjct 320 CTCTTCAATGCCATCGAGACCATCCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCAGG 379 Query 94774 TGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832 ||| | | |||| | | ||||||| |||| || | || || || ||||| Sbjct 380 TGGATCCAAGACAAGGATTCCA-CCTTTGCCCAGCGCCTGGTTGCCTTCGCTGCCGTTGA 438 Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892 ||||||||||||||| || || ||| | |||||| |||||||||||||| |||||||| Sbjct 439 GGGTATCTTCTTCTCCGGCTCGTTCGCCTCTATTTTCTGGCTCAAGAAGCGTGGTCTCAT 498 Query 94893 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 | | || || |||||||||||||| ||||| || || ||||| |||||| Sbjct 499 GGCTGGCCTGACTTTCTCCAACGAGCTCATCTCCCGCGATGAGGGTCTCCAC 550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583235034454160