Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1054 163 9e-35 seq2035 138 3e-27 seq1475 102 2e-16 >seq1054 Length=16682 Score = 163 bits (180), Expect = 9e-35 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | ||| || || ||||| || ||||| || | Sbjct 1482 TTTGCATACCACCACGCAGACGCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGT 1541 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || || || || ||||| || || || || ||||||||||| || || ||||| | Sbjct 1542 AATCGGACAAGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGT 1601 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || ||||| ||||| || | ||||| || ||||| | ||| |||| Sbjct 1602 CCGGAGGAATACCCTCCTTATCTTGAATCTTCGACTTTACGTTGTCAATGGTATCGGATG 1661 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 1662 ATTCCACCTCAAGCGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCAT 1716 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||||||||| | || ||||| || || || || ||||| Sbjct 1258 CATACCACCACGGAGGCGGAGAACAAGATGTAATGTGGACTCCTTCTGGATGTTGTAATC 1317 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| || || || || || || || || || || || || || || || ||||| || || Sbjct 1318 AGACAAAGTACGGCCGTCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGG 1377 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || ||||| ||||| || | || || ||||| || | ||| || | || Sbjct 1378 TGGGATGCCCTCCTTATCTTGAATCTTGGACTTGACGTTATCGATGGTATCCGACGACTC 1437 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || |||| |||||||||||| || || || || || || ||||| Sbjct 1438 GACTTCCAGCGTAATTGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 1488 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || ||||| ||||| || ||||| || || || Sbjct 1714 CATACCACCACGAAGACGAAGCACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTC 1773 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || | || ||||| || || || || || ||||| || || Sbjct 1774 GGACAGAGTGCGACCATCCTCCAACTGCTTTCCTGCGAAAATCAGGCGCTGCTGGTCCGG 1833 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || ||||||||||| || | || ||||| || || | || || | || Sbjct 1834 AGGAATGCCCTCCTTATCCTGAATCTTCGACTTCACATTGTCGATGGTGTCGGACGACTC 1893 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | || | ||||| || || || || || || ||||||||||| Sbjct 1894 GACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 1944 Score = 107 bits (118), Expect = 6e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || | |||||||| ||| || || || || || || Sbjct 1034 CCACCACGAAGACGGAGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 1093 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || | |||||| || || || || || |||||||| || || ||||| || || || Sbjct 1094 AGCGTCCTCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGTGGG 1153 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || |||||||| || || | || || || ||||| | ||||| | ||||| Sbjct 1154 ATACCCTCCTTATCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCAGAAGACTCAACC 1213 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || |||| |||||||| || | || || |||||||||||||| Sbjct 1214 TCGAGAGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1260 Score = 107 bits (118), Expect = 6e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||||| || ||||| || || || || || || Sbjct 1942 CATACCACCACGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTC 2001 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || |||||||| ||||| || ||||| ||||||||||| || || Sbjct 2002 GGAGAGGGTGCGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCCGG 2061 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 || ||||| || || || || || || ||| || ||||| || || | ||| || | | Sbjct 2062 GGGGATTCCCTCCTTGTCTTGGATCTT-GCTCTTAACATTGTCGATGGTATCGGAGGACT 2120 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | || ||||| || | ||||| || || Sbjct 2121 CGACCTCAAGGGTGATGGTCTTGCCAGT 2148 >seq2035 Length=5668 Score = 138 bits (152), Expect = 3e-27 Identities = 474/735 (64%), Gaps = 12/735 (2%) Strand=Plus/Plus Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261 || || |||||||| ||||| || || || || || | | | | | |||| || | Sbjct 1747 ATCGGTATCGATTTGGGTACCACCTACTCGTGCGTGGGTATCTTCAGAGATGACCGCATT 1806 Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || ||||| || || || || ||| | ||||| ||||| | |||||| || || || Sbjct 1807 GAGATCATTGCCAACGACCAGGGCAACCGCACAACCCCATCGTTCGTTGCCTTCACTGAC 1866 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| |||| |||||| | || || || |||| || || |||| || || Sbjct 1867 ACCGAGCGTCTGATCGGTGATGCCGCCAAGAACCAAGTCGCCATGAACCCAAGCAACACC 1926 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAATC 349437 || || || || ||||| || || ||| | | || | ||| | || || | Sbjct 1927 GTCTTCGACGCCAAGCGTCTGATCGGTCGCAAGTTCGCCGACGCTGAGGTC----CAGGC 1982 Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA 349497 || | || || || || || | | | || | ||| || | || ||| || | Sbjct 1983 CGACATGAAGCACTTCCCCTTCAA-GATCATCGACAAG--GGAGGAAAGCCAGTTTGCCA 2039 Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 ||| || | || || || || | || |||||| || || || || ||| | | Sbjct 2040 GGTCGAGTTCAAGGGCGAGACCAAGGACTTCACACCCGAGGAGATCTCCTCCATGATCCT 2099 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 || || ||| || | ||||| || || | || | ||| || | | |||||| | Sbjct 2100 CGTCAAGATGCGTGAGACCGCTGAGGCCTACCTCGGAGGAACCGTCAACAACGCTGTTGT 2159 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 || || || || || || || || ||||||| || || || |||||||| || Sbjct 2160 CACCGTCCCCGCTTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCTGGTCTGAT 2219 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 || || | || ||||| | || || || || || || || || || ||||| || || Sbjct 2220 CGCCGGACTCAACGTTCTCCGTATCATCAACGAGCCTACCGCCGCTGCCATTGCTTACGG 2279 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || || | | || || || |||| || || ||| | |||||||| || Sbjct 2280 TCTCGACAAGAAGGTCGAGGGTGAGCGCAACGTTCTCATCTTCGATCTTGGTGGTGGAAC 2339 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 ||| ||||| || || || || | || ||||| || || || || || | |||||||| Sbjct 2340 TTTCGATGTCTCTCTCCTCACCATCGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCTGG 2399 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 ||| || || | ||||| || || || || || ||||| || || || || || || Sbjct 2400 TGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTAGTCAACCACTTCGTCAACGA 2459 Query 349918 ATTTAAGCGTCAAGC 349932 || ||||| ||||| Sbjct 2460 GTTCAAGCG-CAAGC 2473 >seq1475 Length=37653 Score = 102 bits (112), Expect = 2e-16 Identities = 121/161 (75%), Gaps = 5/161 (3%) Strand=Plus/Plus Query 377434 GATAATGATAATATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCA 377493 |||| ||| ||| || ||||| || ||||||||| | || || || ||| || | Sbjct 26840 GATATTGAGAAT-TTCCTTCAGA-CGCGGCACACCAAGGGTGACGTT---TTTCGACGAC 26894 Query 377494 ACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGC 377553 ||||||||||| ||||||||||| || || | || || | ||||||||||| ||||| Sbjct 26895 ACACCAGCAAAATGGAAAGTATTGAGCGTCATCTGCGTGGCAGGCTCACCAATAGACTGG 26954 Query 377554 GCTGCAATAACGCCAACCATTTCTCCAGGATTGACAATAGC 377594 || |||| || |||||||| || ||||| ||||| | ||| Sbjct 26955 GCGGCAAGAATACCAACCATCTCACCAGGGTTGACCAAAGC 26995 Score = 87.8 bits (96), Expect = 5e-12 Identities = 177/263 (67%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 378184 TCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTT 378243 ||||| | ||||| | |||||| | ||||| | || || || || ||||||||| Sbjct 27609 TCATACTTGACCATGACATCTTCCAGAGCTTTGACGAGACGACGTTGGATGTAACCAGTT 27668 Query 378244 TGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAAT 378303 | ||| || || ||||||||||| | ||| |||||||| |||| || ||||| || Sbjct 27669 TCGGCAGTCTTGACAGCAGTATCAATAAGACCTTCACGACCAGCCATGGCGTGGAAAAAG 27728 Query 378304 AATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGC 378363 ||||| | || ||||| || | | | || | |||| ||| || | | | || Sbjct 27729 AATTCCGATGGTGTAAGCCCTCTCAGGTACGAGTTTTCAACAAAGCCACGAGACTCGGGA 27788 Query 378364 GAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGT 378423 || | ||||| ||||| |||| |||| || || | || || || | ||||| || Sbjct 27789 GAGTAATCATCCTTTGTGAAATGCGGTAGGGTGCGGTACTTGAATCCGAAGGGAATACGC 27848 Query 378424 TTTCCATCAACATTCTGTTGACC 378446 || || || ||| ||||| || Sbjct 27849 TTACCCTCCACAGATTGTTGTCC 27871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515185790227802