Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1566 223 4e-53 seq2493 114 1e-20 seq2445 107 2e-18 >seq1566 Length=8448 Score = 223 bits (246), Expect = 4e-53 Identities = 479/709 (68%), Gaps = 24/709 (3%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAG--CCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 |||||| ||| || | ||| ||||| ||||| || |||||| | ||||| || ||| Sbjct 7539 TGAGACATACAACCTCATGTCTTCCAAA--TACTTCACACACGCCTCCCCAACACTCTTC 7596 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 || |||||||| || ||||| |||| ||||||| |||| | |||||||| || Sbjct 7597 AATGCTGGTACACCACAGGCTCAGCTGTCATCCTGCTTCTTGGTCGACATGAAGGAGGAT 7656 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 || || || ||||| || || |||||| |||||| ||||| ||| | || Sbjct 7657 AGTATTGAGGGTATCTATGACACACTCAAGACATGTGCCATGATCTCAAAGACTGCCGGA 7716 Query 53420 GGTATCGGTATCCACTGC--TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 |||||||| | || | ||| | ||||||| | ||| || || || || | Sbjct 7717 GGTATCGGATTGAACATCCATCGTA--TCCGTGCCACCGGTGCATACATTGCCGGTACCA 7774 Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 |||| | | | || ||||| || ||||||||||||||||||||||| ||| | |||| Sbjct 7775 ACGGAAACTCGAACGGTATCGTTCCCATGCTCCGCGTCTTCAACAACACTGCCAGATACG 7834 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597 | |||||||||| |||||| || | |||||||||||| | ||||| ||||||| Sbjct 7835 TTGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTCGCCATCTACGTTGAGCCATGGCACG 7894 Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657 | || | | ||||| | || || | ||| || || | || || | || || Sbjct 7895 CTGATGTCTTCGAGTTCTTGGACTTGAGGAAGAACCACGGCAAGGAGGAAGTCCGTGCCC 7954 Query 53658 GTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGAC 53716 ||||| |||| ||| ||||| ||||| ||||| ||||||||| | || |||||| || Sbjct 7955 GTGACTTGTTCTAC-GCTCTCTGGATCCCGGATCTCTTCATGAAGCGTGTTGAGAAGAAC 8013 Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAG 53776 | || ||| || |||||||| ||||| ||||| || | || || |||||||| Sbjct 8014 GGTGACTGGACTCTCATGTGCCCCAACGAATGCCCTGGATTGGCGGACGTTTACGGTGAT 8073 Query 53777 GAGTTTAACGAGATGTATCGGACGTACGCAGT-------TCAGGGCCGCTACAAGAAGAA 53829 ||||| | | | || || |||| ||| |||| ||| |||| Sbjct 8074 GAGTTCGAGGCTCTCTACGAGAAATACG-AGTCGGAGAAGAAGGGTCGC------AAGAC 8126 Query 53830 GGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCC 53889 ||||||| | || | ||| | | || ||| || ||| ||||| |||| || Sbjct 8127 TATCAAGGCCCAGAAGCTTTGGTACTCCATTCTCGAGTCTCAGACTGAGACAGGAAACCC 8186 Query 53890 GTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 | ||||| ||||||||| | |||| |||||||||||||||||| Sbjct 8187 TTTCATGTTGTACAAGGATGCTTGCAACCGCAAGAGCAACCAGAAGAAC 8235 >seq2493 Length=2855 Score = 114 bits (126), Expect = 1e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 |||||||||||||| | |||||| ||||||||||| || |||||| |||| || | || Sbjct 667 GCTGATCGTGGTGCCTTCATCGATCAGTCCCAGTCCCTCAACATCCACATGAAGGACCCA 726 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 || ||| |||| | | ||| ||||||||| || |||||| || |||||||| || Sbjct 727 ACAATGGGCAAGATCACCTCCATGCACTTTGCTGGCTGGAAGCTCGGCCTCAAGACCGGC 786 Query 55907 ATGTACTATCTGCGGACC 55924 ||||||||||| || ||| Sbjct 787 ATGTACTATCTCCGTACC 804 >seq2445 Length=7783 Score = 107 bits (118), Expect = 2e-18 Identities = 322/493 (65%), Gaps = 12/493 (2%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||||| ||| || ||||||||||| | ||| || || | ||| || || |||| Sbjct 507 AGGCCAGCCATGAGACCACGCTTCTTGAGCCAGAAAATAGAGGCGAACGAGCCGGAGAAG 448 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC 74924 ||||| || || || || ||||| || ||||| || || || | | ||| ||| Sbjct 447 AAGATACCCTCAACGGCAGCGAAGGCAACCAGGCGCTGGGCAAAGGTGGAATCCTT-GTC 389 Query 74925 ----ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGC 74980 ||||| | |||||| || || || |||| ||||| || ||||| || Sbjct 388 TTGGATCCACCTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATGGTCTCGATGGC 329 Query 74981 TTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTA 75040 | ||||||| || || | | ||||||| | |||| || | || ||||| Sbjct 328 ATTGAAGAGGTATGTGCGCTGGGCCTGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTA 269 Query 75041 CGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 ||||| | ||||| |||| | | ||| | ||||||| | || ||||||| Sbjct 268 TGTCTCGGCGTGAATGTTCTCGATCATGATTTGGAAACCGTAGAAGCAGCGAGCCTCTGG 209 Query 75101 AATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAG 75158 || || || || | |||| || | | | |||| |||| || ||||| || Sbjct 208 GATTTGGACCTCACTGCTGAAGCGCTCGAGAAGGT--TCTCGTTGACAATTCCGTCAGAC 151 Query 75159 GCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGA---GTTTG 75215 |||||||| ||||| || || ||| |||| ||||||||||||| ||| | ||| Sbjct 150 GCGGCGAAGAAAGCGAGAACGTGGGAGATGAAGTAGCGCTCATCGTCATTGAGACGGTTG 91 Query 75216 TCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATC 75275 | ||| || | |||||| | | ||||||||||| | ||||||||| | | | Sbjct 90 TTCCAGTCGTGAAGGTCCTTGGAGAGGTCAATCTCCTCTGCAGTCCAGAAAGACGCTTCC 31 Query 75276 GCCTTTTTGTACA 75288 ||||| ||||||| Sbjct 30 GCCTTCTTGTACA 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547191826733200