Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1566 190 3e-43 >seq1566 Length=8448 Score = 190 bits (210), Expect = 3e-43 Identities = 562/858 (66%), Gaps = 14/858 (2%) Strand=Plus/Minus Query 76280 GATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCAT 76339 ||||| | ||||| ||||| ||||||| | | | || | | ||||||||||| Sbjct 8321 GATGCCAAGTTACACACGGCAACCTCATCTGGAGCAGAGTACTCGACAATCTCCGTGCAC 8262 Query 76340 AGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCC 76399 || ||| | ||| || ||||| || | ||||||||||| ||| || | ||| Sbjct 8261 AGGTTAGAGCTGCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCATCC 8202 Query 76400 TTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACG 76459 || || | | || || |||| || ||| |||| || |||| ||| || | ||| | | Sbjct 8201 TTGTACAACATGAAAGGGTTTCCTGTCTCAGTCTGAGACTCGAGAATGGAGTACCAAA-G 8143 Query 76460 ACTCTAGCTTTTATTATAGATTTGTATCGCTTCT-CTCTT--TCATATTGT--GTATATA 76514 ||| | || |||| ||| | ||||| ||| || |||| ||| | | Sbjct 8142 CTTCTGGGCCTTG--ATAGTCTTGCGACCCTTCTTCTCCGACTCGTATTTCTCGTAGAGA 8085 Query 76515 ACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCA 76574 || || || ||||| || |||| || |||| ||||| ||||| || || ||||| | Sbjct 8084 GCC--TCGAACTCATCACCGTAAACGTCCGCCAATCCAGGGCATTCGTTGGGGCACATGA 8027 Query 76575 ATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAA 76634 | ||| ||||| | | || ||| || ||||| |||||||| || ||||| ||||| Sbjct 8026 GAGTCCAGTCACCGTTCTTCTCAACACGCTTCATGAAGAGATCCGGGATCCAGAGAGCGT 7967 Query 76635 TAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACT 76694 || | || |||| | ||| || || || ||||| | | || | ||||| Sbjct 7966 AGAACAAGTCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTCCTCAAGTCCAAGAACT 7907 Query 76695 CCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTAC 76754 | | | ||||| |||||||| || | || || || | |||| || || || || | Sbjct 7906 CGAAGACATCAGCGTGCCATGGCTCAACGTAGATGGCGAAGGCACCAGGGCGCTTGTTGC 7847 Query 76755 CTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGT 76814 | ||||| || | |||||||||||||| || | || | | ||| |||| || |||| Sbjct 7846 CACCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAACGATACCGT 7787 Query 76815 TAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATA 76874 | || | || || || || | ||| || || ||||| ||| | || | Sbjct 7786 TCGAGTTTCCGTTGGTACCGGCAATGTATGCACCGGTGGCACGGATACGATGGATGTTCA 7727 Query 76875 GGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGC 76934 || || ||||| || | || ||||| | ||||| || | |||||||||||| | Sbjct 7726 ATCCGATACCTCCGGCAGTCTTTGAGATCATGGCACATGTCTTGAGTGTGTCATAGATAC 7667 Query 76935 CCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAG 76994 |||| |||||||| ||| |||||| | | || ||| |||| ||| || | Sbjct 7666 CCTCAATACTATCCTCCTTCATGTCGACCAAGAAGCAGGATGACAGCTGAGCCTGTGGTG 7607 Query 76995 TTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGT 77054 | || ||||| || | ||| || || || || ||||| |||| ||| | || |||| Sbjct 7606 TACCAGCATTGAAGAGTGTTGGGGAGGCGTGTGTGAAGTATTTGGAAGACATGAGGTTGT 7547 Query 77055 ATGTTTCAATAACTGCTTCT--ATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 |||| ||||| | ||||| |||||| ||||| || || || |||||||| | Sbjct 7546 ATGTCTCAATGGC--CTTCTCAATATCCTCGCCGTGAATGCCAACCGCCACACGCATAAT 7489 Query 77113 CATATGCTGAGGTCGTTC 77130 ||| ||||| || | ||| Sbjct 7488 CATGTGCTGTGGCCTTTC 7471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712902906122880