Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3808_20[genbank_20GCA_5F000750675.1_202014-09-09] 3,534 sequences; 27,778,879 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1054 167 5e-36 seq335 156 9e-33 >seq1054 Length=16682 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||| || | ||||| || || |||||||||||||| Sbjct 1034 CCACCACGAAGACGGAGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 1093 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| | |||||||| || || |||||||||||||||| || || ||||| || Sbjct 1094 AGCGTCCTCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGTGGG 1153 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || |||||||| | || ||| | || || ||||| |||| || || Sbjct 1154 ATACCCTCCTTATCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCAGAAGACTCAACC 1213 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| || ||||| || ||||| ||||| || || |||||||| Sbjct 1214 TCGAGAGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1260 Score = 167 bits (184), Expect = 5e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 |||||||||||| || || |||| ||| | ||| || || || |||||||| || | Sbjct 1489 ACCACCACGCAGACGCAGCACCAAATGCAGGGTGGACTCCTTCTGAATGTTGTAATCGGA 1548 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| |||||||||||||| || || || || |||||||||| || || ||||| | Sbjct 1549 CAAG-GTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAG 1607 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||||||||||||| ||||| ||||| | |||||| | || || || || || | ||| | Sbjct 1608 GAATACCCTCCTTATCTTGAATCTTCGACTTTACGTTGTCAATGGTATCGGATGATTCCA 1667 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 1668 CCTCAAGCGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCAT 1716 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || |||||||| ||| || || ||||||||||| |||| Sbjct 1261 ACCACCACGGAGGCGGAGAACAAGATGTAATGTGGACTCCTTCTGGATGTTGTAATCAGA 1320 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || ||||| ||||| || || || || || || |||| || || ||||| || Sbjct 1321 CAAAGTACGGCCGTCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGG 1380 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| ||||| ||||| | || ||| ||||||| || ||||| | ||||| Sbjct 1381 GATGCCCTCCTTATCTTGAATCTTGGACTTGACGTTATCGATGGTATCCGACGACTCGAC 1440 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || || || ||||| || || | |||||| ||||| || ||||| Sbjct 1441 TTCCAGCGTAATTGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 1488 Score = 145 bits (160), Expect = 2e-29 Identities = 158/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || |||| || | || || || |||||||||||||| | Sbjct 1945 ACCACCACGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 2004 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| ||||| || ||||| ||||||| |||||| ||||| || Sbjct 2005 GAGGGTGCGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCCGGGGG 2064 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || |||||||||||||||||| ||||| || || | ||||| || || || | |||| Sbjct 2065 GATTCCCTCCTTGTCTTGGATC-TTGCTCTTAACATTGTCGATGGTATCGGAGGACTCGA 2123 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCA 283077 | || || ||||| ||||| || |||| Sbjct 2124 CCTCAAGGGTGATGGTCTTGCCAGTCA 2150 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| || | || || || || ||||||||||| | Sbjct 1717 ACCACCACGAAGACGAAGCACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGA 1776 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| | || || || || || |||| || || ||||| || Sbjct 1777 CAGAGTGCGACCATCCTCCAACTGCTTTCCTGCGAAAATCAGGCGCTGCTGGTCCGGAGG 1836 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||| || || ||||| | || || | ||||| ||||| || | ||||| Sbjct 1837 AATGCCCTCCTTATCCTGAATCTTCGACTTCACATTGTCGATGGTGTCGGACGACTCGAC 1896 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 1897 CTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 1944 >seq335 Length=36749 Score = 156 bits (172), Expect = 9e-33 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | ||| |||||||||||||| || || || ||||| ||| Sbjct 30392 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAG 30333 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| || || ||||| ||||| ||||||||||| |||||||| | || || | Sbjct 30332 ATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 30273 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||||||||| || | || || || || ||||| ||||| ||||||| ||||| ||| Sbjct 30272 TCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACG 30213 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 30212 AAGATTTGCAT 30202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046691804303236