Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq514 107 4e-18 seq512 105 1e-17 >seq514 Length=32850 Score = 107 bits (118), Expect = 4e-18 Identities = 200/294 (68%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 319374 GTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTT 319433 |||||||||| | ||||| || ||| ||||| |||| || || |||||||| Sbjct 17585 GTAGTAACTCTTAGCCTCGGGCTTCTGCTTGACGAAGTCGGCCAAGTTACCCTTGTAGCA 17526 Query 319434 CTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCC 319493 |||||| ||| ||||| ||| ||| ||||| || | |||||||| || Sbjct 17525 GGCCAGCTTCTTTCCAGGCTCGTAGTGGTAGATATCAGTGCAGACCTCATCGAGGAAGCC 17466 Query 319494 GGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAA 319553 ||||||||| || ||||||| ||| | || | || | ||||||| || | Sbjct 17465 GGAGTCGTGAGAAACAATCAGCGACGTGATCTCGGTGTGGGTCTTCAGGTACTCCTGGAG 17406 Query 319554 CCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGC 319613 |||| | ||||| | ||| | ||||| || || ||||||||||| || | | || Sbjct 17405 CCACTTGACGTTGGCAACATCCAAGTGGTTAGTAGGTTCGTCAAGAAGAAGAACATCGGC 17346 Query 319614 GTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667 |||| | ||| || | ||||||||||| ||||| ||||| || ||||| || Sbjct 17345 CTTCATCAACATAGCCCTGGCAAGAGCGAGCTTCATCTTCCATCCACCGGACAG 17292 >seq512 Length=30657 Score = 105 bits (116), Expect = 1e-17 Identities = 308/469 (66%), Gaps = 8/469 (2%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 |||||| |||||||||| |||| | || || ||||| | || ||||| ||| Sbjct 17844 TTTGCCCAGCGTCTCGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCCGGCTCCTTC 17903 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 |||| || ||||| ||| || | ||| ||||||| | || |||||| Sbjct 17904 GCATCCATTTTCTGGCTCAAGAAGCGTGGCCTCATGGCTGGCCTGACCTTCTCGAACGAG 17963 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTC 230352 ||||| || |||||||||||||| | |||| | || | | || | ||| Sbjct 17964 CTCATCTCCCGTGACGAGGGTCTCCACACTGACTTCGCCTGCCTCCTCTTCTCCCACCTC 18023 Query 230353 CAGAACAAGCTACCATTCGAGACGG---TCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 || || || ||| | ||| || || || | ||||||| ||||| || | | Sbjct 18024 AAGCACC-GC--CCAAGCAAGAAGGCCGTCCAAGACGTCATTACCGAAGCCGTCACCATC 18080 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTT 230469 || |||||||| | ||| || |||| ||| || | ||||||||||| ||||| Sbjct 18081 GAGCAGGAGTTCTTGACTGAGGCACTTCCCTGTGCTCTGCTCGGCATGAACGC-CAACTT 18139 Query 230470 -ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| || ||||| || ||||| ||||| | | | || | || || ||||||| Sbjct 18140 GATGAAGCAATACATTGAGTTCGTCGCCGATAGACTGCTGCTTTCTCTCGGAAACGAGAA 18199 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 ||||| || | ||||| || | || |||||| ||| || || || ||||| Sbjct 18200 GTACTACAAGTCGACCAACCCATTCGACTTCATGGAGAACATCTCCCTGGCGGGCAAGAC 18259 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||||||||| ||||| ||| ||||| || | | ||||||| ||| Sbjct 18260 CAACTTCTTCGAGAAGCGCGTCGCCGACTACCAAAAGACTGGTGTCATG 18308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057774055831550