Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3654 172 7e-38 seq512 123 3e-23 >seq3654 Length=7047 Score = 172 bits (190), Expect = 7e-38 Identities = 415/623 (67%), Gaps = 4/623 (1%) Strand=Plus/Minus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 |||||||| || || | || | |||| ||||| ||||| | || ||||| | | | Sbjct 3743 TCAAACTCATCGCCGTAGACGTCCGCCAAACCAGGGCATTCGTTGGGGCACATGAGAGTC 3684 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAA 54069 || || |||| | || || || ||||| ||||||||||| ||||| ||||| || || Sbjct 3683 CAGTCGCCGTTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCAGAGAGCGTAGAAC 3624 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 || || | || | |||||| ||||| |||||| | | || |||||| | | Sbjct 3623 AAG-TCACGGGCACGGACTTCCTCCTTTCCGTGGTTCTTTCTCAAGTCCAGGAACTCAAA 3565 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 | ||| | ||||| || || | ||| |||| | | | ||||| || ||||| || || Sbjct 3564 GACATCCGCGTGCCATGGCTCGACGTAGATGGCGAAAGCGCCAGGACGCTTGTTGCCACC 3505 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 ||| || | |||||| || ||||| || | || | | ||| || | ||||| || || Sbjct 3504 CTGGTCAACGTATCTTGCAGTGTTGTTGAAGACACGGAGCATAGGGACGATACCGTTCGA 3445 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 54309 || ||||| |||| || || ||| ||||||| ||| ||| | || Sbjct 3444 GTTTCCGTTGGTACCGGCAATGTATGCACCAGTGGCACGGATACGGTGAATGTTCAATCC 3385 Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGT-TTTAACGTATCATAGATGCCCT 54368 || || || || | || ||||| | || || ||| || | || |||||||| |||| Sbjct 3384 GATGCCTCCAGCAGTCTTTGAGATCATGGCACA-CGTCTTGAGTGTGTCATAGATACCCT 3326 Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 54428 | |||||||| ||| |||||| | | || ||| |||| ||| | || | Sbjct 3325 CAATACTATCCTCCTTCATGTCGACCAAGAAGCAGGATGACAGCTGGGCCTGTGGTGTAC 3266 Query 54429 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 54488 | ||||| || | || || |||||||| || || |||| ||| | || ||||| | Sbjct 3265 CAGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAATATTTGGAAGACATGAGGTTGTATG 3206 Query 54489 TCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 54548 ||||||| | || |||||| ||||| || || || |||||||| | ||||| Sbjct 3205 TCTCGATGGTCTTCTCAATATCCTCGCCGTGAATGCCAACGGCAACACGCATAATCATGT 3146 Query 54549 GCTGAGGTCTTTCAACGATCTTG 54571 |||| || || ||| | | |||| Sbjct 3145 GCTGCGGCCTCTCAGCAACCTTG 3123 >seq512 Length=30657 Score = 123 bits (136), Expect = 3e-23 Identities = 555/868 (64%), Gaps = 20/868 (2%) Strand=Plus/Minus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 ||| || || | |||||||| || | || || || ||||| || || || || || | Sbjct 18308 CATGACACCAGTCTTTTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCGC 18249 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCC 23950 | || || || |||||||| ||| |||| ||||| || ||| | ||| | | | Sbjct 18248 CAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGTCGACTTGTAG-TACTTCTCGTTTC 18190 Query 23951 CAATTCAGAAATCAA---TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACA 24007 | | ||||| || |||||| ||||| ||||| || ||| ||||||| | Sbjct 18189 CGAG--AGAAAGCAGCAGTCTATCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGC 18132 Query 24008 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 24067 ||||| || | || | ||||| ||| |||| | || || || || || | ||| Sbjct 18131 GTTCATGCCGAGCAGAGCACAGGGAAGTGCCTCAGTCAAGAACTCCTGCTCGATGGTGAC 18072 Query 24068 CGCGTCTGTTATAATAGATCTT--ACTGT-TTCTTCACTCGGTGGATACAATAAATGTTT 24124 || || || || | |||| || | ||||| | || || | | | || Sbjct 18071 GGCTTCGGTAATGACG--TCTTGGACGGCCTTCTTGCTTGGGCGG-TGCTTGAGGTGGGA 18015 Query 24125 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 24184 || | | || ||||| || ||| ||||||||||| | || | ||||| || Sbjct 18014 GAAGAGGAGGCAGGCGAAGTCAGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTCGA 17955 Query 24185 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 24244 || || || || | ||| ||||||||||| || ||||| || ||||| || || || || Sbjct 17954 GAAGGTCAGGCCAGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGATGCGAAGGAGCC 17895 Query 24245 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGC 24301 || ||||| || || || || || |||||||||| || | | || | | | Sbjct 17894 GGAGAAGAAGATACCCTCGACGGCGGCAAAGGCAACGAGACGCTGGGCAAAGGTAGAATC 17835 Query 24302 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 24361 |||| || |||||| | |||||| || |||||||| || | ||||| || ||||| Sbjct 17834 CTTGTCTTGGATCCACCTGACAGCCCAGTCAGCCTTCTTCTTAATGCAAGGAATAGTCTC 17775 Query 24362 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 24421 || ||||| ||||| || | || | || || | ||||| || || | || Sbjct 17774 GATGGCATTGAAGAGGTATGTGCGTTGAGCCTGCTCCTTGATGTATGTGTCGATGAGGAG 17715 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 || | || | |||||||| || || ||||| || |||||||| || | || Sbjct 17714 GGAGTATGTCTCGGCGTGAATGTTCTCGATCATGATTTGGAAACCGTAGAAGCAGCGGGC 17655 Query 24482 CTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 ||| | || || || || | | || || || | || || || || |||||||| Sbjct 17654 CTCTGGGATTTGGACCTCACTGCTGAAGCGCTCGAGGAGGTTCTCGTTGACAATTCCGTC 17595 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA---TTTTTCGTCTGGTGTTA- 24597 | ||| || || || || | || || || || || | ||||| | || | Sbjct 17594 AGAGGCGGCGAAGAAAGCGAGAACGTGGGAGATGAAGTAGCGCTCATCGTC-GTTGAGAC 17536 Query 24598 GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 24657 | || ||||| || | | || || || | ||| | || || | ||||| || |||| Sbjct 17535 GGTTGTTCCAGTCGTGAAGGTCCTTGGAGAGATCAATCTCCTCTGCGGTCCAGAAAGATG 17476 Query 24658 CCTCTGCCTTTTTATACATATTCCAGAT 24685 |||| ||||| || ||||| | |||||| Sbjct 17475 CCTCGGCCTTCTTGTACATCTGCCAGAT 17448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593694251698800