Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1689 113 4e-20 seq347 107 2e-18 >seq1689 Length=16827 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| ||||| ||| |||||||| |||||||| ||||||| | Sbjct 15484 CCACCACGAAGACGGAGAACCAAATGCAGAGTCGACTCCTTCTGAATGTTGTAGTCCGAC 15425 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||||||||| || || || | || || | |||||||||| || Sbjct 15424 AGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGA 15365 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| || || | | | | ||||| | |||| Sbjct 15364 ATGCCCTCCTTGTCTTGAATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCCACC 15305 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||| |||||||| || | || ||||| || || ||||| Sbjct 15304 TCAAGCGTAATCGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCAT 15258 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| || | |||||||||||| |||||||| ||||| | || || | | ||| Sbjct 15241 AGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCC 15182 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| ||| | || || | |||||||||| ||| | ||| |||||||| Sbjct 15181 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 15122 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | ||| || || | ||| || | || |||||| Sbjct 15121 TGGATCTTCGACTTCACATTGTCGATGGTGTCGGACGACTCAACCTCGAGAGTGATGGTC 15062 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || || || |||||||| Sbjct 15061 TTGCCAGTAAGGGTCTTAACGAAGATTTGCAT 15030 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| |||| || | || |||||||| || ||||| ||||| | Sbjct 15028 CCACCACGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 14969 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| || || || || || | || || | ||||||||| ||| Sbjct 14968 AGGGTGCGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGA 14909 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | | ||| ||||| || ||| Sbjct 14908 ATTCCCTCCTTGTCTTGGATCTTGCTCTTAACGTTGTCGATGGTATCGGAGGACTCAACC 14849 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 || | ||| ||||||||||| || Sbjct 14848 TCGAGGGTGATGGTCTTGCCAGT 14826 >seq347 Length=76637 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || || |||| || | |||||||||||| || ||||| ||||||| Sbjct 19990 CCTCCACGGAGTCTCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAA 19931 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| ||||| || | || || | |||||||||| ||| Sbjct 19930 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGA 19871 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | | ||| ||| || | |||| Sbjct 19870 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGACGACTCCACC 19811 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || |||||||| || | || || || || |||||||| Sbjct 19810 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 19764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422240235943460