Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3654 125 1e-23 seq512 102 2e-16 >seq3654 Length=7047 Score = 125 bits (138), Expect = 1e-23 Identities = 183/256 (71%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| |||||||||||||| ||||| || || | ||| || || ||||| |||||| Sbjct 3386 CCGATGCCTCCAGCAGTCTTTGAGATCATGGCACACGTCTTGAGTGTGTCATAGATACCC 3327 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGG-GTGTGACTGT 94904 ||||| ||||| || | | | | | | |||||| || || || |||| |||| ||| Sbjct 3326 TCAATACTATCCTCCTTCATGTCGACCAAGAAGCAGGATGACAGCTGGGCCTGTG-GTGT 3268 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 ||| ||| || ||||| |||||||| || || ||||| | |||||||| | || Sbjct 3267 ACCAGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAATATTTGGAAGACATGAGGTTGTA 3208 Query 94965 TGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 ||| || ||| | || || ||||||||||| || || |||||||||||||| Sbjct 3207 TGTCTCGATGGTCTTCTCAATATCCTCGCCGTGAATGCCAACGGCAACACGCATAATCAT 3148 Query 95025 GTCCTGAGGGCGCTCA 95040 || ||| || | |||| Sbjct 3147 GTGCTGCGGCCTCTCA 3132 >seq512 Length=30657 Score = 102 bits (112), Expect = 2e-16 Identities = 288/440 (65%), Gaps = 7/440 (2%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| || || || || |||||||| || | |||||||||||||||||| Sbjct 17859 GTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCCGGCTCCTTCGCATCCATTTTCTGG 17918 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | || |||| || |||| ||| || ||| |||| || | ||| Sbjct 17919 CTCAAGAAGCGTGGCCTCATGGCTGGCCTGACCTTCTCGAACGAGCTCATCTCCCGTGAC 17978 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 || ||||| || ||||| || ||| | || || | | ||| | Sbjct 17979 GAGGGTCTCCACACTGACTTCGCCTGCCTCCTCTTCTCCCA--CCTCAAGCACCGCCCAA 18036 Query 102098 TCAAGAGAAAGG--ATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTC 102155 |||| |||| | | || | | || ||||||||| || || || || || Sbjct 18037 GCAAG---AAGGCCGTCCAAGACGTCATTACCGAAGCCGTCACCATCGAGCAGGAGTTCT 18093 Query 102156 TCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACA 102215 | || | | || || | | | || |||||| ||| ||||||| || |||| Sbjct 18094 TGACTGAGGCACTTCCCTGTGCTCTGCTCGGCATGAACGCCAACTTGATGAAGCAATACA 18153 Query 102216 TTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTA 102275 |||| || || || |||| ||| || || | ||| || ||| |||| || | Sbjct 18154 TTGAGTTCGTCGCCGATAGACTGCTGCTTTCTCTCGGAAACGAGAAGTACTACAAGTCGA 18213 Query 102276 CCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAA 102335 ||||||| ||| |||||||| || || ||||| | | ||||||||||| || || | Sbjct 18214 CCAACCCATTCGACTTCATGGAGAACATCTCCCTGGCGGGCAAGACCAACTTCTTCGAGA 18273 Query 102336 AGAGAGTCGCCGAGTATCAA 102355 || | |||||||| || ||| Sbjct 18274 AGCGCGTCGCCGACTACCAA 18293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989537277719175