Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3654 172 7e-38 seq512 131 2e-25 >seq3654 Length=7047 Score = 172 bits (190), Expect = 7e-38 Identities = 397/593 (67%), Gaps = 4/593 (1%) Strand=Plus/Minus Query 63214 CCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63273 |||| | ||| ||||| | || ||||| | | ||| || |||| | || || || | Sbjct 3718 CCAAACCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTCGACACGCT 3659 Query 63274 TCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCG 63332 |||| ||||||||||| ||||| ||||| || || || || | | | |||||| Sbjct 3658 TCATGAAGAGATCAGGGATCCAGAGAGCGTAGAACAAG-TCACGGGCACGGACTTCCTCC 3600 Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 ||||| |||||| | | || |||||| | | | ||| | ||||| || || | | Sbjct 3599 TTTCCGTGGTTCTTTCTCAAGTCCAGGAACTCAAAGACATCCGCGTGCCATGGCTCGACG 3540 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 || ||||| | | | ||||| || ||||| || ||||| || | |||||| || ||||| Sbjct 3539 TAGATGGCGAAAGCGCCAGGACGCTTGTTGCCACCCTGGTCAACGTATCTTGCAGTGTTG 3480 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512 || | || | | ||| || | |||||||| || | || |||||||||| || || Sbjct 3479 TTGAAGACACGGAGCATAGGGACGATACCGTTCGAGTTTCCGTTGGTACCGGCAATGTAT 3420 Query 63513 CCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63572 | ||| ||||||| ||| ||| | || || || || || | || ||||| Sbjct 3419 GCACCAGTGGCACGGATACGGTGAATGTTCAATCCGATGCCTCCAGCAGTCTTTGAGATC 3360 Query 63573 AATGCGCATCGT-TTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAG 63631 | || || ||| || | ||||||||||| || || || ||||| || |||||| | Sbjct 3359 ATGGCACA-CGTCTTGAGTGTGTCATAGATACCCTCAATACTATCCTCCTTCATGTCGAC 3301 Query 63632 TAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63691 | || ||| |||| ||| | | || || ||||| || | || || ||||| Sbjct 3300 CAAGAAGCAGGATGACAGCTGGGCCTGTGGTGTACCAGCATTGAAGAGTGTTGGGGAAGC 3241 Query 63692 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63751 ||| || || |||| ||| | || ||||| ||||| || | || |||||| Sbjct 3240 GTGTGTGAAATATTTGGAAGACATGAGGTTGTATGTCTCGATGGTCTTCTCAATATCCTC 3181 Query 63752 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAA 63804 ||||| || || || |||||||| | ||||||||| || || ||| ||| Sbjct 3180 GCCGTGAATGCCAACGGCAACACGCATAATCATGTGCTGCGGCCTCTCAGCAA 3128 >seq512 Length=30657 Score = 131 bits (144), Expect = 2e-25 Identities = 366/558 (66%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| || ||| ||||||||||| | || | ||||| || || || || Sbjct 18004 CAGGCGAAGTCAGTGTGGAGACCCTCGTCACGGGAGATGAGCTCGTTCGAGAAGGTCAGG 17945 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || | ||| ||||||||||| || ||||| || ||||| ||||| || ||||| |||||| Sbjct 17944 CCAGCCATGAGGCCACGCTTCTTGAGCCAGAAAATGGATGCGAAGGAGCCGGAGAAGAAG 17885 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33758 || || || || || |||||||||| || | || || | | | |||| || Sbjct 17884 ATACCCTCGACGGCGGCAAAGGCAACGAGACGCTGGGCAAAGGTAGAATCCTTGTCTTGG 17825 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 |||||| | |||||| || |||||||| || | ||||| || || || |||||||| Sbjct 17824 ATCCACCTGACAGCCCAGTCAGCCTTCTTCTTAATGCAAGGAATAGTCTCGATGGCATTG 17765 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 ||||| || | || | || || | || || ||||| | || || | Sbjct 17764 AAGAGGTATGTGCGTTGAGCCTGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTATGTC 17705 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || | |||||||| || || || || || |||||||| || | ||||| | || Sbjct 17704 TCGGCGTGAATGTTCTCGATCATGATTTGGAAACCGTAGAAGCAGCGGGCCTCTGGGATT 17645 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || || || | | || || || | || || || || ||||| ||| ||| || Sbjct 17644 TGGACCTCACTGCTGAAGCGCTCGAGGAGGTTCTCGTTGACAATTCCGTCAGAGGCGGCG 17585 Query 33999 AAAAACGCCAATACATGTTTTATAAAATA---TTTTTCGTCTGGTGTTA-GTTTATTCCA 34054 || || || | || || || || || | ||||| | || | | || ||||| Sbjct 17584 AAGAAAGCGAGAACGTGGGAGATGAAGTAGCGCTCATCGTC-GTTGAGACGGTTGTTCCA 17526 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || | | || || || | ||| | || || | ||||| || |||||||| ||||| Sbjct 17525 GTCGTGAAGGTCCTTGGAGAGATCAATCTCCTCTGCGGTCCAGAAAGATGCCTCGGCCTT 17466 Query 34115 TTTATACATATTCCAGAT 34132 || ||||| | |||||| Sbjct 17465 CTTGTACATCTGCCAGAT 17448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629788589026800