Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudogymnoascus_20sp._20VKM_20F-
4246_20[genbank_20GCA_5F000750735.1_202014-09-09] 3,685 sequences; 25,759,859 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq1689 91.5 1e-13
seq475 84.2 2e-11
seq347 84.2 2e-11
>seq1689
Length=16827
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | ||| || || | || ||||| || |||||||| || || |
Sbjct 15484 CCACCACGAAGACGGAGAACCAAATGCAGAGTCGACTCCTTCTGAATGTTGTAGTCCGAC 15425
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| || || ||||| |||||||| ||||||| || ||||| || |||||
Sbjct 15424 AGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCCGGAGGA 15365
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716
||||| || ||||| ||| | || | || | | || || | || | | ||||||
Sbjct 15364 ATGCCCTCCTTGTCT-TGAATCTTGGACTTGACGTTGTCAATGGTATCCGACGACTCCAC 15306
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||| || | ||||||||| || | || || ||||| || ||||||
Sbjct 15305 CTCAAGCGTAATCGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCATA 15257
>seq475
Length=36479
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| || ||||| || |||||| ||||||| |||||||| || || || || || || |||
Sbjct 18356 TCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGTTGCTGGTCCGGGGGAATTCCCTCCTTG 18297
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | || | ||||||| | ||||||||||| ||| |
Sbjct 18296 TCCTGGATCTTCGACTTGACATTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATG 18237
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAA 139755
|||||||| ||||| || || |||||
Sbjct 18236 GTCTTGCCCGTCAAGGTCTTGACGAA 18211
>seq347
Length=76637
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615
|| ||||||| || ||||| || || ||||| || || | || | || |||
Sbjct 19972 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCATCCTCG 19913
Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675
||||| || || || ||||||| || ||||| || || || || || || ||||| |
Sbjct 19912 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGG 19853
Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735
|| || || | | || | ||||||| | ||||||||||| ||| | ||||||
Sbjct 19852 ATCTTGGACTTGACATTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 19793
Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| |||| || || ||||| ||||||||
Sbjct 19792 CCCGTCAGGGTCTTCACGAAGATTTGCAT 19764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496041150052000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |